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129 results
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Efficient set tests for the genetic analysis of correlated traits.
Casale FP, Rakitsch B, Lippert C, Stegle O. Casale FP, et al. Among authors: stegle o. Nat Methods. 2015 Aug;12(8):755-8. doi: 10.1038/nmeth.3439. Epub 2015 Jun 15. Nat Methods. 2015. PMID: 26076425
Joint genetic analysis of gene expression data with inferred cellular phenotypes.
Parts L, Stegle O, Winn J, Durbin R. Parts L, et al. Among authors: stegle o. PLoS Genet. 2011 Jan 20;7(1):e1001276. doi: 10.1371/journal.pgen.1001276. PLoS Genet. 2011. PMID: 21283789 Free PMC article.
Whole-genome sequencing of multiple Arabidopsis thaliana populations.
Cao J, Schneeberger K, Ossowski S, Günther T, Bender S, Fitz J, Koenig D, Lanz C, Stegle O, Lippert C, Wang X, Ott F, Müller J, Alonso-Blanco C, Borgwardt K, Schmid KJ, Weigel D. Cao J, et al. Among authors: stegle o. Nat Genet. 2011 Aug 28;43(10):956-63. doi: 10.1038/ng.911. Nat Genet. 2011. PMID: 21874002
Multiple reference genomes and transcriptomes for Arabidopsis thaliana.
Gan X, Stegle O, Behr J, Steffen JG, Drewe P, Hildebrand KL, Lyngsoe R, Schultheiss SJ, Osborne EJ, Sreedharan VT, Kahles A, Bohnert R, Jean G, Derwent P, Kersey P, Belfield EJ, Harberd NP, Kemen E, Toomajian C, Kover PX, Clark RM, Rätsch G, Mott R. Gan X, et al. Among authors: stegle o. Nature. 2011 Aug 28;477(7365):419-23. doi: 10.1038/nature10414. Nature. 2011. PMID: 21874022 Free PMC article.
Spontaneous epigenetic variation in the Arabidopsis thaliana methylome.
Becker C, Hagmann J, Müller J, Koenig D, Stegle O, Borgwardt K, Weigel D. Becker C, et al. Among authors: stegle o. Nature. 2011 Sep 20;480(7376):245-9. doi: 10.1038/nature10555. Nature. 2011. PMID: 22057020
Joint modelling of confounding factors and prominent genetic regulators provides increased accuracy in genetical genomics studies.
Fusi N, Stegle O, Lawrence ND. Fusi N, et al. Among authors: stegle o. PLoS Comput Biol. 2012 Jan;8(1):e1002330. doi: 10.1371/journal.pcbi.1002330. Epub 2012 Jan 5. PLoS Comput Biol. 2012. PMID: 22241974 Free PMC article.
Using probabilistic estimation of expression residuals (PEER) to obtain increased power and interpretability of gene expression analyses.
Stegle O, Parts L, Piipari M, Winn J, Durbin R. Stegle O, et al. Nat Protoc. 2012 Feb 16;7(3):500-7. doi: 10.1038/nprot.2011.457. Nat Protoc. 2012. PMID: 22343431 Free PMC article.
Patterns of cis regulatory variation in diverse human populations.
Stranger BE, Montgomery SB, Dimas AS, Parts L, Stegle O, Ingle CE, Sekowska M, Smith GD, Evans D, Gutierrez-Arcelus M, Price A, Raj T, Nisbett J, Nica AC, Beazley C, Durbin R, Deloukas P, Dermitzakis ET. Stranger BE, et al. Among authors: stegle o. PLoS Genet. 2012;8(4):e1002639. doi: 10.1371/journal.pgen.1002639. Epub 2012 Apr 19. PLoS Genet. 2012. PMID: 22532805 Free PMC article.
A Lasso multi-marker mixed model for association mapping with population structure correction.
Rakitsch B, Lippert C, Stegle O, Borgwardt K. Rakitsch B, et al. Among authors: stegle o. Bioinformatics. 2013 Jan 15;29(2):206-14. doi: 10.1093/bioinformatics/bts669. Epub 2012 Nov 22. Bioinformatics. 2013. PMID: 23175758
Transcriptome and genome sequencing uncovers functional variation in humans.
Lappalainen T, Sammeth M, Friedländer MR, 't Hoen PA, Monlong J, Rivas MA, Gonzàlez-Porta M, Kurbatova N, Griebel T, Ferreira PG, Barann M, Wieland T, Greger L, van Iterson M, Almlöf J, Ribeca P, Pulyakhina I, Esser D, Giger T, Tikhonov A, Sultan M, Bertier G, MacArthur DG, Lek M, Lizano E, Buermans HP, Padioleau I, Schwarzmayr T, Karlberg O, Ongen H, Kilpinen H, Beltran S, Gut M, Kahlem K, Amstislavskiy V, Stegle O, Pirinen M, Montgomery SB, Donnelly P, McCarthy MI, Flicek P, Strom TM; Geuvadis Consortium, Lehrach H, Schreiber S, Sudbrak R, Carracedo A, Antonarakis SE, Häsler R, Syvänen AC, van Ommen GJ, Brazma A, Meitinger T, Rosenstiel P, Guigó R, Gut IG, Estivill X, Dermitzakis ET. Lappalainen T, et al. Among authors: stegle o. Nature. 2013 Sep 26;501(7468):506-11. doi: 10.1038/nature12531. Epub 2013 Sep 15. Nature. 2013. PMID: 24037378 Free PMC article.
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