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35 results
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Creating PWMs of transcription factors using 3D structure-based computation of protein-DNA free binding energies.
Alamanova D, Stegmaier P, Kel A. Alamanova D, et al. Among authors: stegmaier p. BMC Bioinformatics. 2010 May 3;11:225. doi: 10.1186/1471-2105-11-225. BMC Bioinformatics. 2010. PMID: 20438625 Free PMC article.
Systematic DNA-binding domain classification of transcription factors.
Stegmaier P, Kel AE, Wingender E. Stegmaier P, et al. Genome Inform. 2004;15(2):276-86. Genome Inform. 2004. PMID: 15706513
TRANSFAC and its module TRANSCompel: transcriptional gene regulation in eukaryotes.
Matys V, Kel-Margoulis OV, Fricke E, Liebich I, Land S, Barre-Dirrie A, Reuter I, Chekmenev D, Krull M, Hornischer K, Voss N, Stegmaier P, Lewicki-Potapov B, Saxel H, Kel AE, Wingender E. Matys V, et al. Among authors: stegmaier p. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D108-10. doi: 10.1093/nar/gkj143. Nucleic Acids Res. 2006. PMID: 16381825 Free PMC article.
Composite Module Analyst: identification of transcription factor binding site combinations using genetic algorithm.
Waleev T, Shtokalo D, Konovalova T, Voss N, Cheremushkin E, Stegmaier P, Kel-Margoulis O, Wingender E, Kel A. Waleev T, et al. Among authors: stegmaier p. Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W541-5. doi: 10.1093/nar/gkl342. Nucleic Acids Res. 2006. PMID: 16845066 Free PMC article.
ExPlain: finding upstream drug targets in disease gene regulatory networks.
Kel A, Voss N, Valeev T, Stegmaier P, Kel-Margoulis O, Wingender E. Kel A, et al. Among authors: stegmaier p. SAR QSAR Environ Res. 2008;19(5-6):481-94. doi: 10.1080/10629360802083806. SAR QSAR Environ Res. 2008. PMID: 18853298
Molecular mechanistic associations of human diseases.
Stegmaier P, Krull M, Voss N, Kel AE, Wingender E. Stegmaier P, et al. BMC Syst Biol. 2010 Sep 6;4:124. doi: 10.1186/1752-0509-4-124. BMC Syst Biol. 2010. PMID: 20815942 Free PMC article.
Advanced computational biology methods identify molecular switches for malignancy in an EGF mouse model of liver cancer.
Stegmaier P, Voss N, Meier T, Kel A, Wingender E, Borlak J. Stegmaier P, et al. PLoS One. 2011 Mar 28;6(3):e17738. doi: 10.1371/journal.pone.0017738. PLoS One. 2011. PMID: 21464922 Free PMC article.
A discriminative approach for unsupervised clustering of DNA sequence motifs.
Stegmaier P, Kel A, Wingender E, Borlak J. Stegmaier P, et al. PLoS Comput Biol. 2013;9(3):e1002958. doi: 10.1371/journal.pcbi.1002958. Epub 2013 Mar 21. PLoS Comput Biol. 2013. PMID: 23555204 Free PMC article.
Walking pathways with positive feedback loops reveal DNA methylation biomarkers of colorectal cancer.
Kel A, Boyarskikh U, Stegmaier P, Leskov LS, Sokolov AV, Yevshin I, Mandrik N, Stelmashenko D, Koschmann J, Kel-Margoulis O, Krull M, Martínez-Cardús A, Moran S, Esteller M, Kolpakov F, Filipenko M, Wingender E. Kel A, et al. Among authors: stegmaier p. BMC Bioinformatics. 2019 Apr 18;20(Suppl 4):119. doi: 10.1186/s12859-019-2687-7. BMC Bioinformatics. 2019. PMID: 30999858 Free PMC article.
Signaling Pathways Potentially Responsible for Foam Cell Formation: Cholesterol Accumulation or Inflammatory Response-What is First?
Orekhov AN, Sukhorukov VN, Nikiforov NG, Kubekina MV, Sobenin IA, Foxx KK, Pintus S, Stegmaier P, Stelmashenko D, Kel A, Poznyak AV, Wu WK, Kasianov AS, Makeev VY, Manabe I, Oishi Y. Orekhov AN, et al. Among authors: stegmaier p. Int J Mol Sci. 2020 Apr 14;21(8):2716. doi: 10.3390/ijms21082716. Int J Mol Sci. 2020. PMID: 32295185 Free PMC article.
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