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Multilocus Analysis Resolves the European Finch Epidemic Strain of Trichomonas gallinae and Suggests Introgression from Divergent Trichomonads.

Alrefaei AF, Low R, Hall N, Jardim R, Dávila A, Gerhold R, John S, Steinbiss S, Cunningham AA, Lawson B, Bell D, Tyler K. Alrefaei AF, et al. Among authors: steinbiss s. Genome Biol Evol. 2019 Aug 1;11(8):2391-2402. doi: 10.1093/gbe/evz164. Genome Biol Evol. 2019. PMID: 31364699 Free PMC article.

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Genome organization and DNA accessibility control antigenic variation in trypanosomes.

Müller LSM, Cosentino RO, Förstner KU, Guizetti J, Wedel C, Kaplan N, Janzen CJ, Arampatzi P, Vogel J, Steinbiss S, Otto TD, Saliba AE, Sebra RP, Siegel TN. Müller LSM, et al. Among authors: steinbiss s. Nature. 2018 Nov;563(7729):121-125. doi: 10.1038/s41586-018-0619-8. Epub 2018 Oct 17. Nature. 2018. PMID: 30333624 Free PMC article.

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Complete avian malaria parasite genomes reveal features associated with lineage-specific evolution in birds and mammals.

Böhme U, Otto TD, Cotton JA, Steinbiss S, Sanders M, Oyola SO, Nicot A, Gandon S, Patra KP, Herd C, Bushell E, Modrzynska KK, Billker O, Vinetz JM, Rivero A, Newbold CI, Berriman M. Böhme U, et al. Among authors: steinbiss s. Genome Res. 2018 Apr;28(4):547-560. doi: 10.1101/gr.218123.116. Epub 2018 Mar 2. Genome Res. 2018. PMID: 29500236 Free PMC article.

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EuPathDB: the eukaryotic pathogen genomics database resource.

Aurrecoechea C, Barreto A, Basenko EY, Brestelli J, Brunk BP, Cade S, Crouch K, Doherty R, Falke D, Fischer S, Gajria B, Harb OS, Heiges M, Hertz-Fowler C, Hu S, Iodice J, Kissinger JC, Lawrence C, Li W, Pinney DF, Pulman JA, Roos DS, Shanmugasundram A, Silva-Franco F, Steinbiss S, Stoeckert CJ Jr, Spruill D, Wang H, Warrenfeltz S, Zheng J. Aurrecoechea C, et al. Among authors: steinbiss s. Nucleic Acids Res. 2017 Jan 4;45(D1):D581-D591. doi: 10.1093/nar/gkw1105. Epub 2016 Nov 29. Nucleic Acids Res. 2017. PMID: 27903906 Free PMC article.

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First Draft Genome Sequence of the Dourine Causative Agent: Trypanosoma Equiperdum Strain OVI.

Hébert L, Moumen B, Madeline A, Steinbiss S, Lakhdar L, Van Reet N, Büscher P, Laugier C, Cauchard J, Petry S. Hébert L, et al. Among authors: steinbiss s. J Genomics. 2017 Jan 12;5:1-3. doi: 10.7150/jgen.17904. eCollection 2017. J Genomics. 2017. PMID: 28138343 Free PMC article.

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Companion: a web server for annotation and analysis of parasite genomes.

Steinbiss S, Silva-Franco F, Brunk B, Foth B, Hertz-Fowler C, Berriman M, Otto TD. Steinbiss S, et al. Nucleic Acids Res. 2016 Jul 8;44(W1):W29-34. doi: 10.1093/nar/gkw292. Epub 2016 Apr 21. Nucleic Acids Res. 2016. PMID: 27105845 Free PMC article.

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Community-driven development for computational biology at Sprints, Hackathons and Codefests.

Möller S, Afgan E, Banck M, Bonnal RJ, Booth T, Chilton J, Cock PJ, Gumbel M, Harris N, Holland R, Kalaš M, Kaján L, Kibukawa E, Powel DR, Prins P, Quinn J, Sallou O, Strozzi F, Seemann T, Sloggett C, Soiland-Reyes S, Spooner W, Steinbiss S, Tille A, Travis AJ, Guimera R, Katayama T, Chapman BA. Möller S, et al. Among authors: steinbiss s. BMC Bioinformatics. 2014;15 Suppl 14(Suppl 14):S7. doi: 10.1186/1471-2105-15-S14-S7. Epub 2014 Nov 27. BMC Bioinformatics. 2014. PMID: 25472764 Free PMC article.

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The genome of the sparganosis tapeworm Spirometra erinaceieuropaei isolated from the biopsy of a migrating brain lesion.

Bennett HM, Mok HP, Gkrania-Klotsas E, Tsai IJ, Stanley EJ, Antoun NM, Coghlan A, Harsha B, Traini A, Ribeiro DM, Steinbiss S, Lucas SB, Allinson KS, Price SJ, Santarius TS, Carmichael AJ, Chiodini PL, Holroyd N, Dean AF, Berriman M. Bennett HM, et al. Among authors: steinbiss s. Genome Biol. 2014;15(11):510. doi: 10.1186/PREACCEPT-2413673241432389. Genome Biol. 2014. PMID: 25413302 Free PMC article.

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GenomeTools: a comprehensive software library for efficient processing of structured genome annotations.

Gremme G, Steinbiss S, Kurtz S. Gremme G, et al. Among authors: steinbiss s. IEEE/ACM Trans Comput Biol Bioinform. 2013 May-Jun;10(3):645-56. doi: 10.1109/TCBB.2013.68. IEEE/ACM Trans Comput Biol Bioinform. 2013. PMID: 24091398

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An expressed, endogenous Nodavirus-like element captured by a retrotransposon in the genome of the plant parasitic nematode Bursaphelenchus xylophilus.

Cotton JA, Steinbiss S, Yokoi T, Tsai IJ, Kikuchi T. Cotton JA, et al. Among authors: steinbiss s. Sci Rep. 2016 Dec 22;6:39749. doi: 10.1038/srep39749. Sci Rep. 2016. PMID: 28004836 Free PMC article.

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