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Topological augmentation to infer hidden processes in biological systems.
Sunnåker M, Zamora-Sillero E, López García de Lomana A, Rudroff F, Sauer U, Stelling J, Wagner A. Sunnåker M, et al. Among authors: stelling j. Bioinformatics. 2014 Jan 15;30(2):221-7. doi: 10.1093/bioinformatics/btt638. Epub 2013 Dec 2. Bioinformatics. 2014. PMID: 24297519 Free PMC article.
Efficient Reconstruction of Predictive Consensus Metabolic Network Models.
van Heck RG, Ganter M, Martins Dos Santos VA, Stelling J. van Heck RG, et al. Among authors: stelling j. PLoS Comput Biol. 2016 Aug 26;12(8):e1005085. doi: 10.1371/journal.pcbi.1005085. eCollection 2016 Aug. PLoS Comput Biol. 2016. PMID: 27563720 Free PMC article.
The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models.
Hucka M, Finney A, Sauro HM, Bolouri H, Doyle JC, Kitano H, Arkin AP, Bornstein BJ, Bray D, Cornish-Bowden A, Cuellar AA, Dronov S, Gilles ED, Ginkel M, Gor V, Goryanin II, Hedley WJ, Hodgman TC, Hofmeyr JH, Hunter PJ, Juty NS, Kasberger JL, Kremling A, Kummer U, Le Novère N, Loew LM, Lucio D, Mendes P, Minch E, Mjolsness ED, Nakayama Y, Nelson MR, Nielsen PF, Sakurada T, Schaff JC, Shapiro BE, Shimizu TS, Spence HD, Stelling J, Takahashi K, Tomita M, Wagner J, Wang J; SBML Forum. Hucka M, et al. Among authors: stelling j. Bioinformatics. 2003 Mar 1;19(4):524-31. doi: 10.1093/bioinformatics/btg015. Bioinformatics. 2003. PMID: 12611808
SBML Level 3: an extensible format for the exchange and reuse of biological models.
Keating SM, Waltemath D, König M, Zhang F, Dräger A, Chaouiya C, Bergmann FT, Finney A, Gillespie CS, Helikar T, Hoops S, Malik-Sheriff RS, Moodie SL, Moraru II, Myers CJ, Naldi A, Olivier BG, Sahle S, Schaff JC, Smith LP, Swat MJ, Thieffry D, Watanabe L, Wilkinson DJ, Blinov ML, Begley K, Faeder JR, Gómez HF, Hamm TM, Inagaki Y, Liebermeister W, Lister AL, Lucio D, Mjolsness E, Proctor CJ, Raman K, Rodriguez N, Shaffer CA, Shapiro BE, Stelling J, Swainston N, Tanimura N, Wagner J, Meier-Schellersheim M, Sauro HM, Palsson B, Bolouri H, Kitano H, Funahashi A, Hermjakob H, Doyle JC, Hucka M; SBML Level 3 Community members. Keating SM, et al. Among authors: stelling j. Mol Syst Biol. 2020 Aug;16(8):e9110. doi: 10.15252/msb.20199110. Mol Syst Biol. 2020. PMID: 32845085 Free PMC article. Review.
Robustness and innovation in synthetic genotype networks.
Santos-Moreno J, Tasiudi E, Kusumawardhani H, Stelling J, Schaerli Y. Santos-Moreno J, et al. Among authors: stelling j. Nat Commun. 2023 Apr 28;14(1):2454. doi: 10.1038/s41467-023-38033-3. Nat Commun. 2023. PMID: 37117168 Free PMC article.
211 results