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Association mapping in structured populations.
Pritchard JK, Stephens M, Rosenberg NA, Donnelly P. Pritchard JK, et al. Among authors: stephens m. Am J Hum Genet. 2000 Jul;67(1):170-81. doi: 10.1086/302959. Epub 2000 May 26. Am J Hum Genet. 2000. PMID: 10827107 Free PMC article.
Inference of population structure using multilocus genotype data: linked loci and correlated allele frequencies.
Falush D, Stephens M, Pritchard JK. Falush D, et al. Among authors: stephens m. Genetics. 2003 Aug;164(4):1567-87. Genetics. 2003. PMID: 12930761 Free PMC article.
Estimating recent migration and population-size surfaces.
Al-Asadi H, Petkova D, Stephens M, Novembre J. Al-Asadi H, et al. Among authors: stephens m. PLoS Genet. 2019 Jan 14;15(1):e1007908. doi: 10.1371/journal.pgen.1007908. eCollection 2019 Jan. PLoS Genet. 2019. PMID: 30640906 Free PMC article.
Linkage disequilibrium-based quality control for large-scale genetic studies.
Scheet P, Stephens M. Scheet P, et al. Among authors: stephens m. PLoS Genet. 2008 Aug 1;4(8):e1000147. doi: 10.1371/journal.pgen.1000147. PLoS Genet. 2008. PMID: 18670630 Free PMC article.
Our method is implemented in the software package fastPHASE, available from the Stephens Lab website (http://stephenslab.uchicago.edu/software.html)....
Our method is implemented in the software package fastPHASE, available from the Stephens Lab website (http://stephenslab.uchicago.edu …
Insights into recombination from population genetic variation.
Hellenthal G, Stephens M. Hellenthal G, et al. Among authors: stephens m. Curr Opin Genet Dev. 2006 Dec;16(6):565-72. doi: 10.1016/j.gde.2006.10.001. Epub 2006 Oct 16. Curr Opin Genet Dev. 2006. PMID: 17049225 Review.
The effects of genotype-dependent recombination, and transmission asymmetry, on linkage disequilibrium.
Hellenthal G, Pritchard JK, Stephens M. Hellenthal G, et al. Among authors: stephens m. Genetics. 2006 Mar;172(3):2001-5. doi: 10.1534/genetics.104.039271. Epub 2005 Dec 30. Genetics. 2006. PMID: 16387890 Free PMC article.
A comparison of phasing algorithms for trios and unrelated individuals.
Marchini J, Cutler D, Patterson N, Stephens M, Eskin E, Halperin E, Lin S, Qin ZS, Munro HM, Abecasis GR, Donnelly P; International HapMap Consortium. Marchini J, et al. Among authors: stephens m. Am J Hum Genet. 2006 Mar;78(3):437-50. doi: 10.1086/500808. Epub 2006 Jan 26. Am J Hum Genet. 2006. PMID: 16465620 Free PMC article.
msHOT: modifying Hudson's ms simulator to incorporate crossover and gene conversion hotspots.
Hellenthal G, Stephens M. Hellenthal G, et al. Among authors: stephens m. Bioinformatics. 2007 Feb 15;23(4):520-1. doi: 10.1093/bioinformatics/btl622. Epub 2006 Dec 6. Bioinformatics. 2007. PMID: 17150995
Imputation-based analysis of association studies: candidate regions and quantitative traits.
Servin B, Stephens M. Servin B, et al. Among authors: stephens m. PLoS Genet. 2007 Jul;3(7):e114. doi: 10.1371/journal.pgen.0030114. Epub 2007 May 30. PLoS Genet. 2007. PMID: 17676998 Free PMC article.
Methods described here are implemented in a software package, Bim-Bam, available from the Stephens Lab website http://stephenslab.uchicago.edu/software.html....
Methods described here are implemented in a software package, Bim-Bam, available from the Stephens Lab website http://stephenslab.uch …
Fast and accurate estimation of the population-scaled mutation rate, theta, from microsatellite genotype data.
Roychoudhury A, Stephens M. Roychoudhury A, et al. Among authors: stephens m. Genetics. 2007 Jun;176(2):1363-6. doi: 10.1534/genetics.105.049080. Genetics. 2007. PMID: 17579241 Free PMC article.
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