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A comparison of bayesian methods for haplotype reconstruction from population genotype data.
Stephens M, Donnelly P. Stephens M, et al. Am J Hum Genet. 2003 Nov;73(5):1162-9. doi: 10.1086/379378. Epub 2003 Oct 20. Am J Hum Genet. 2003. PMID: 14574645 Free PMC article.
The new algorithm is included in the software package PHASE, version 2.0, available online (http://www.stat.washington.edu/stephens/software.html)....
The new algorithm is included in the software package PHASE, version 2.0, available online (http://www.stat.washington.edu/stephens/s …
Inference of population structure using multilocus genotype data: linked loci and correlated allele frequencies.
Falush D, Stephens M, Pritchard JK. Falush D, et al. Among authors: stephens m. Genetics. 2003 Aug;164(4):1567-87. Genetics. 2003. PMID: 12930761 Free PMC article.
Linkage disequilibrium-based quality control for large-scale genetic studies.
Scheet P, Stephens M. Scheet P, et al. Among authors: stephens m. PLoS Genet. 2008 Aug 1;4(8):e1000147. doi: 10.1371/journal.pgen.1000147. PLoS Genet. 2008. PMID: 18670630 Free PMC article.
Our method is implemented in the software package fastPHASE, available from the Stephens Lab website (http://stephenslab.uchicago.edu/software.html)....
Our method is implemented in the software package fastPHASE, available from the Stephens Lab website (http://stephenslab.uchicago.edu …
Insights into recombination from population genetic variation.
Hellenthal G, Stephens M. Hellenthal G, et al. Among authors: stephens m. Curr Opin Genet Dev. 2006 Dec;16(6):565-72. doi: 10.1016/j.gde.2006.10.001. Epub 2006 Oct 16. Curr Opin Genet Dev. 2006. PMID: 17049225 Review.
The effects of genotype-dependent recombination, and transmission asymmetry, on linkage disequilibrium.
Hellenthal G, Pritchard JK, Stephens M. Hellenthal G, et al. Among authors: stephens m. Genetics. 2006 Mar;172(3):2001-5. doi: 10.1534/genetics.104.039271. Epub 2005 Dec 30. Genetics. 2006. PMID: 16387890 Free PMC article.
A comparison of phasing algorithms for trios and unrelated individuals.
Marchini J, Cutler D, Patterson N, Stephens M, Eskin E, Halperin E, Lin S, Qin ZS, Munro HM, Abecasis GR, Donnelly P; International HapMap Consortium. Marchini J, et al. Among authors: stephens m. Am J Hum Genet. 2006 Mar;78(3):437-50. doi: 10.1086/500808. Epub 2006 Jan 26. Am J Hum Genet. 2006. PMID: 16465620 Free PMC article.
New evidence for hybrid zones of forest and savanna elephants in Central and West Africa.
Mondol S, Moltke I, Hart J, Keigwin M, Brown L, Stephens M, Wasser SK. Mondol S, et al. Among authors: stephens m. Mol Ecol. 2015 Dec;24(24):6134-47. doi: 10.1111/mec.13472. Epub 2015 Dec 12. Mol Ecol. 2015. PMID: 26577954
msHOT: modifying Hudson's ms simulator to incorporate crossover and gene conversion hotspots.
Hellenthal G, Stephens M. Hellenthal G, et al. Among authors: stephens m. Bioinformatics. 2007 Feb 15;23(4):520-1. doi: 10.1093/bioinformatics/btl622. Epub 2006 Dec 6. Bioinformatics. 2007. PMID: 17150995
Imputation-based analysis of association studies: candidate regions and quantitative traits.
Servin B, Stephens M. Servin B, et al. Among authors: stephens m. PLoS Genet. 2007 Jul;3(7):e114. doi: 10.1371/journal.pgen.0030114. Epub 2007 May 30. PLoS Genet. 2007. PMID: 17676998 Free PMC article.
Methods described here are implemented in a software package, Bim-Bam, available from the Stephens Lab website http://stephenslab.uchicago.edu/software.html....
Methods described here are implemented in a software package, Bim-Bam, available from the Stephens Lab website http://stephenslab.uch …
Fast and accurate estimation of the population-scaled mutation rate, theta, from microsatellite genotype data.
Roychoudhury A, Stephens M. Roychoudhury A, et al. Among authors: stephens m. Genetics. 2007 Jun;176(2):1363-6. doi: 10.1534/genetics.105.049080. Genetics. 2007. PMID: 17579241 Free PMC article.
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