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An expansive human regulatory lexicon encoded in transcription factor footprints.
Neph S, Vierstra J, Stergachis AB, Reynolds AP, Haugen E, Vernot B, Thurman RE, John S, Sandstrom R, Johnson AK, Maurano MT, Humbert R, Rynes E, Wang H, Vong S, Lee K, Bates D, Diegel M, Roach V, Dunn D, Neri J, Schafer A, Hansen RS, Kutyavin T, Giste E, Weaver M, Canfield T, Sabo P, Zhang M, Balasundaram G, Byron R, MacCoss MJ, Akey JM, Bender MA, Groudine M, Kaul R, Stamatoyannopoulos JA. Neph S, et al. Among authors: stergachis ab. Nature. 2012 Sep 6;489(7414):83-90. doi: 10.1038/nature11212. Nature. 2012. PMID: 22955618 Free PMC article.
Panorama: a targeted proteomics knowledge base.
Sharma V, Eckels J, Taylor GK, Shulman NJ, Stergachis AB, Joyner SA, Yan P, Whiteaker JR, Halusa GN, Schilling B, Gibson BW, Colangelo CM, Paulovich AG, Carr SA, Jaffe JD, MacCoss MJ, MacLean B. Sharma V, et al. Among authors: stergachis ab. J Proteome Res. 2014 Sep 5;13(9):4205-10. doi: 10.1021/pr5006636. Epub 2014 Aug 18. J Proteome Res. 2014. PMID: 25102069 Free PMC article.
DNase I-hypersensitive exons colocalize with promoters and distal regulatory elements.
Mercer TR, Edwards SL, Clark MB, Neph SJ, Wang H, Stergachis AB, John S, Sandstrom R, Li G, Sandhu KS, Ruan Y, Nielsen LK, Mattick JS, Stamatoyannopoulos JA. Mercer TR, et al. Among authors: stergachis ab. Nat Genet. 2013 Aug;45(8):852-9. doi: 10.1038/ng.2677. Epub 2013 Jun 23. Nat Genet. 2013. PMID: 23793028 Free PMC article.
Developmental fate and cellular maturity encoded in human regulatory DNA landscapes.
Stergachis AB, Neph S, Reynolds A, Humbert R, Miller B, Paige SL, Vernot B, Cheng JB, Thurman RE, Sandstrom R, Haugen E, Heimfeld S, Murry CE, Akey JM, Stamatoyannopoulos JA. Stergachis AB, et al. Cell. 2013 Aug 15;154(4):888-903. doi: 10.1016/j.cell.2013.07.020. Cell. 2013. PMID: 23953118 Free PMC article.
40 results