Stewart RM - Search Results

1

EBSeq: an empirical Bayes hierarchical model for inference in RNA-seq experiments.

Leng N, Dawson JA, Thomson JA, Ruotti V, Rissman AI, Smits BM, Haag JD, Gould MN, Stewart RM, Kendziorski C. Leng N, et al. Among authors: stewart rm. Bioinformatics. 2013 Apr 15;29(8):1035-43. doi: 10.1093/bioinformatics/btt087. Epub 2013 Feb 21. Bioinformatics. 2013. PMID: 23428641 Free PMC article.

2

Induced pluripotent stem cell lines derived from human somatic cells.

Yu J, Vodyanik MA, Smuga-Otto K, Antosiewicz-Bourget J, Frane JL, Tian S, Nie J, Jonsdottir GA, Ruotti V, Stewart R, Slukvin II, Thomson JA. Yu J, et al. Science. 2007 Dec 21;318(5858):1917-20. doi: 10.1126/science.1151526. Epub 2007 Nov 20. Science. 2007. PMID: 18029452

3

Whole-genome analysis of histone H3 lysine 4 and lysine 27 methylation in human embryonic stem cells.

Pan G, Tian S, Nie J, Yang C, Ruotti V, Wei H, Jonsdottir GA, Stewart R, Thomson JA. Pan G, et al. Cell Stem Cell. 2007 Sep 13;1(3):299-312. doi: 10.1016/j.stem.2007.08.003. Cell Stem Cell. 2007. PMID: 18371364 Free article.

4

A study of the relationships between oligonucleotide properties and hybridization signal intensities from NimbleGen microarray datasets.

Wei H, Kuan PF, Tian S, Yang C, Nie J, Sengupta S, Ruotti V, Jonsdottir GA, Keles S, Thomson JA, Stewart R. Wei H, et al. Nucleic Acids Res. 2008 May;36(9):2926-38. doi: 10.1093/nar/gkn133. Epub 2008 Apr 1. Nucleic Acids Res. 2008. PMID: 18385155 Free PMC article.

5

Molecular profiling reveals similarities and differences between primitive subsets of hematopoietic cells generated in vitro from human embryonic stem cells and in vivo during embryogenesis.

Salvagiotto G, Zhao Y, Vodyanik M, Ruotti V, Stewart R, Marra M, Thomson J, Eaves C, Slukvin I. Salvagiotto G, et al. Exp Hematol. 2008 Oct;36(10):1377-89. doi: 10.1016/j.exphem.2008.06.015. Exp Hematol. 2008. PMID: 18922365 Free PMC article.

6

Human induced pluripotent stem cells free of vector and transgene sequences.

Yu J, Hu K, Smuga-Otto K, Tian S, Stewart R, Slukvin II, Thomson JA. Yu J, et al. Science. 2009 May 8;324(5928):797-801. doi: 10.1126/science.1172482. Epub 2009 Mar 26. Science. 2009. PMID: 19325077 Free PMC article.

7

ProbeMatch: rapid alignment of oligonucleotides to genome allowing both gaps and mismatches.

Kim YJ, Teletia N, Ruotti V, Maher CA, Chinnaiyan AM, Stewart R, Thomson JA, Patel JM. Kim YJ, et al. Bioinformatics. 2009 Jun 1;25(11):1424-5. doi: 10.1093/bioinformatics/btp178. Epub 2009 Apr 7. Bioinformatics. 2009. PMID: 19351619 Free PMC article.

8

MicroRNA 92b controls the G1/S checkpoint gene p57 in human embryonic stem cells.

Sengupta S, Nie J, Wagner RJ, Yang C, Stewart R, Thomson JA. Sengupta S, et al. Stem Cells. 2009 Jul;27(7):1524-8. doi: 10.1002/stem.84. Stem Cells. 2009. PMID: 19544458

9

Human DNA methylomes at base resolution show widespread epigenomic differences.

Lister R, Pelizzola M, Dowen RH, Hawkins RD, Hon G, Tonti-Filippini J, Nery JR, Lee L, Ye Z, Ngo QM, Edsall L, Antosiewicz-Bourget J, Stewart R, Ruotti V, Millar AH, Thomson JA, Ren B, Ecker JR. Lister R, et al. Nature. 2009 Nov 19;462(7271):315-22. doi: 10.1038/nature08514. Epub 2009 Oct 14. Nature. 2009. PMID: 19829295 Free PMC article.

10

RNA-Seq gene expression estimation with read mapping uncertainty.

Li B, Ruotti V, Stewart RM, Thomson JA, Dewey CN. Li B, et al. Among authors: stewart rm. Bioinformatics. 2010 Feb 15;26(4):493-500. doi: 10.1093/bioinformatics/btp692. Epub 2009 Dec 18. Bioinformatics. 2010. PMID: 20022975 Free PMC article.

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