Stoltzfus A - Search Results

1

NeXML: rich, extensible, and verifiable representation of comparative data and metadata.

Vos RA, Balhoff JP, Caravas JA, Holder MT, Lapp H, Maddison WP, Midford PE, Priyam A, Sukumaran J, Xia X, Stoltzfus A. Vos RA, et al. Among authors: stoltzfus a. Syst Biol. 2012 Jul;61(4):675-89. doi: 10.1093/sysbio/sys025. Epub 2012 Feb 22. Syst Biol. 2012. PMID: 22357728 Free PMC article.

2

Phylotastic! Making tree-of-life knowledge accessible, reusable and convenient.

Stoltzfus A, Lapp H, Matasci N, Deus H, Sidlauskas B, Zmasek CM, Vaidya G, Pontelli E, Cranston K, Vos R, Webb CO, Harmon LJ, Pirrung M, O'Meara B, Pennell MW, Mirarab S, Rosenberg MS, Balhoff JP, Bik HM, Heath TA, Midford PE, Brown JW, McTavish EJ, Sukumaran J, Westneat M, Alfaro ME, Steele A, Jordan G. Stoltzfus A, et al. BMC Bioinformatics. 2013 May 13;14:158. doi: 10.1186/1471-2105-14-158. BMC Bioinformatics. 2013. PMID: 23668630 Free PMC article.

3

Sharing and re-use of phylogenetic trees (and associated data) to facilitate synthesis.

Stoltzfus A, O'Meara B, Whitacre J, Mounce R, Gillespie EL, Kumar S, Rosauer DF, Vos RA. Stoltzfus A, et al. BMC Res Notes. 2012 Oct 22;5:574. doi: 10.1186/1756-0500-5-574. BMC Res Notes. 2012. PMID: 23088596 Free PMC article.

4

Bio::NEXUS: a Perl API for the NEXUS format for comparative biological data.

Hladish T, Gopalan V, Liang C, Qiu W, Yang P, Stoltzfus A. Hladish T, et al. Among authors: stoltzfus a. BMC Bioinformatics. 2007 Jun 8;8:191. doi: 10.1186/1471-2105-8-191. BMC Bioinformatics. 2007. PMID: 17559666 Free PMC article.

5

Phylotastic: Improving Access to Tree-of-Life Knowledge With Flexible, on-the-Fly Delivery of Trees.

Nguyen VD, Nguyen TH, Tayeen ASM, Laughinghouse HD 4th, Sánchez-Reyes LL, Wiggins J, Pontelli E, Mozzherin D, O'Meara B, Stoltzfus A. Nguyen VD, et al. Among authors: stoltzfus a. Evol Bioinform Online. 2020 Apr 6;16:1176934319899384. doi: 10.1177/1176934319899384. eCollection 2020. Evol Bioinform Online. 2020. PMID: 32372858 Free PMC article. Review.

6

Initial implementation of a comparative data analysis ontology.

Prosdocimi F, Chisham B, Pontelli E, Thompson JD, Stoltzfus A. Prosdocimi F, et al. Among authors: stoltzfus a. Evol Bioinform Online. 2009 Jul 3;5:47-66. doi: 10.4137/ebo.s2320. Evol Bioinform Online. 2009. PMID: 19812726 Free PMC article.

7

Nexplorer: phylogeny-based exploration of sequence family data.

Gopalan V, Qiu WG, Chen MZ, Stoltzfus A. Gopalan V, et al. Among authors: stoltzfus a. Bioinformatics. 2006 Jan 1;22(1):120-1. doi: 10.1093/bioinformatics/bti747. Epub 2005 Nov 2. Bioinformatics. 2006. PMID: 16267087 Free PMC article.

8

Why we don't want another "Synthesis".

Stoltzfus A. Stoltzfus A. Biol Direct. 2017 Oct 2;12(1):23. doi: 10.1186/s13062-017-0194-1. Biol Direct. 2017. PMID: 28969666 Free PMC article.

9

Mendelian-mutationism: the forgotten evolutionary synthesis.

Stoltzfus A, Cable K. Stoltzfus A, et al. J Hist Biol. 2014 Winter;47(4):501-46. doi: 10.1007/s10739-014-9383-2. J Hist Biol. 2014. PMID: 24811736 Free article.

10

Mutation-biased adaptation in a protein NK model.

Stoltzfus A. Stoltzfus A. Mol Biol Evol. 2006 Oct;23(10):1852-62. doi: 10.1093/molbev/msl064. Epub 2006 Jul 20. Mol Biol Evol. 2006. PMID: 16857856

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