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T-RMSD: a fine-grained, structure-based classification method and its application to the functional characterization of TNF receptors.
Magis C, Stricher F, van der Sloot AM, Serrano L, Notredame C. Magis C, et al. J Mol Biol. 2010 Jul 16;400(3):605-17. doi: 10.1016/j.jmb.2010.05.012. Epub 2010 May 13. J Mol Biol. 2010. PMID: 20471393
Using protein design algorithms to understand the molecular basis of disease caused by protein-DNA interactions: the Pax6 example.
Alibés A, Nadra AD, De Masi F, Bulyk ML, Serrano L, Stricher F. Alibés A, et al. Among authors: stricher f. Nucleic Acids Res. 2010 Nov;38(21):7422-31. doi: 10.1093/nar/gkq683. Epub 2010 Aug 4. Nucleic Acids Res. 2010. PMID: 20685816 Free PMC article.
Protein design in biological networks: from manipulating the input to modifying the output.
Van der Sloot AM, Kiel C, Serrano L, Stricher F. Van der Sloot AM, et al. Protein Eng Des Sel. 2009 Sep;22(9):537-42. doi: 10.1093/protein/gzp032. Epub 2009 Jul 2. Protein Eng Des Sel. 2009. PMID: 19574296 Review.
Analysis of disease-linked rhodopsin mutations based on structure, function, and protein stability calculations.
Rakoczy EP, Kiel C, McKeone R, Stricher F, Serrano L. Rakoczy EP, et al. Among authors: stricher f. J Mol Biol. 2011 Jan 14;405(2):584-606. doi: 10.1016/j.jmb.2010.11.003. Epub 2010 Nov 19. J Mol Biol. 2011. PMID: 21094163
The stability effects of protein mutations appear to be universally distributed.
Tokuriki N, Stricher F, Schymkowitz J, Serrano L, Tawfik DS. Tokuriki N, et al. J Mol Biol. 2007 Jun 22;369(5):1318-32. doi: 10.1016/j.jmb.2007.03.069. Epub 2007 Mar 31. J Mol Biol. 2007. PMID: 17482644
Engineering of large numbers of highly specific homing endonucleases that induce recombination on novel DNA targets.
Arnould S, Chames P, Perez C, Lacroix E, Duclert A, Epinat JC, Stricher F, Petit AS, Patin A, Guillier S, Rolland S, Prieto J, Blanco FJ, Bravo J, Montoya G, Serrano L, Duchateau P, Pâques F. Arnould S, et al. J Mol Biol. 2006 Jan 20;355(3):443-58. doi: 10.1016/j.jmb.2005.10.065. Epub 2005 Nov 15. J Mol Biol. 2006. PMID: 16310802
Design of miniproteins by the transfer of active sites onto small-size scaffolds.
Stricher F, Martin L, Vita C. Stricher F, et al. Methods Mol Biol. 2006;340:113-49. doi: 10.1385/1-59745-116-9:113. Methods Mol Biol. 2006. PMID: 16957335 Review.
Engineering of weak helper interactions for high-efficiency FRET probes.
Grünberg R, Burnier JV, Ferrar T, Beltran-Sastre V, Stricher F, van der Sloot AM, Garcia-Olivas R, Mallabiabarrena A, Sanjuan X, Zimmermann T, Serrano L. Grünberg R, et al. Among authors: stricher f. Nat Methods. 2013 Oct;10(10):1021-7. doi: 10.1038/nmeth.2625. Epub 2013 Sep 1. Nat Methods. 2013. PMID: 23995386
Quantifying information transfer by protein domains: analysis of the Fyn SH2 domain structure.
Lenaerts T, Ferkinghoff-Borg J, Stricher F, Serrano L, Schymkowitz JW, Rousseau F. Lenaerts T, et al. BMC Struct Biol. 2008 Oct 8;8:43. doi: 10.1186/1472-6807-8-43. BMC Struct Biol. 2008. PMID: 18842137 Free PMC article.
The FoldX web server: an online force field.
Schymkowitz J, Borg J, Stricher F, Nys R, Rousseau F, Serrano L. Schymkowitz J, et al. Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W382-8. doi: 10.1093/nar/gki387. Nucleic Acids Res. 2005. PMID: 15980494 Free PMC article.
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