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APE: Analyses of Phylogenetics and Evolution in R language.
Paradis E, Claude J, Strimmer K. Paradis E, et al. Bioinformatics. 2004 Jan 22;20(2):289-90. doi: 10.1093/bioinformatics/btg412. Bioinformatics. 2004. PMID: 14734327
TREEFINDER: a powerful graphical analysis environment for molecular phylogenetics.
Jobb G, von Haeseler A, Strimmer K. Jobb G, et al. BMC Evol Biol. 2004 Jun 28;4:18. doi: 10.1186/1471-2148-4-18. BMC Evol Biol. 2004. PMID: 15222900 Free PMC article. Retracted.
An empirical Bayes approach to inferring large-scale gene association networks.
Schäfer J, Strimmer K. Schäfer J, et al. Bioinformatics. 2005 Mar;21(6):754-64. doi: 10.1093/bioinformatics/bti062. Epub 2004 Oct 12. Bioinformatics. 2005. PMID: 15479708
Gene ranking and biomarker discovery under correlation.
Zuber V, Strimmer K. Zuber V, et al. Among authors: strimmer k. Bioinformatics. 2009 Oct 15;25(20):2700-7. doi: 10.1093/bioinformatics/btp460. Epub 2009 Jul 30. Bioinformatics. 2009. PMID: 19648135
MALDIquant: a versatile R package for the analysis of mass spectrometry data.
Gibb S, Strimmer K. Gibb S, et al. Among authors: strimmer k. Bioinformatics. 2012 Sep 1;28(17):2270-1. doi: 10.1093/bioinformatics/bts447. Epub 2012 Jul 12. Bioinformatics. 2012. PMID: 22796955
Over-optimism in bioinformatics: an illustration.
Jelizarow M, Guillemot V, Tenenhaus A, Strimmer K, Boulesteix AL. Jelizarow M, et al. Among authors: strimmer k. Bioinformatics. 2010 Aug 15;26(16):1990-8. doi: 10.1093/bioinformatics/btq323. Epub 2010 Jun 26. Bioinformatics. 2010. PMID: 20581402
fdrtool: a versatile R package for estimating local and tail area-based false discovery rates.
Strimmer K. Strimmer K. Bioinformatics. 2008 Jun 15;24(12):1461-2. doi: 10.1093/bioinformatics/btn209. Epub 2008 Apr 25. Bioinformatics. 2008. PMID: 18441000
CONTACT: strimmer@uni-leipzig.de....
CONTACT: strimmer@uni-leipzig.de....
Identifying periodically expressed transcripts in microarray time series data.
Wichert S, Fokianos K, Strimmer K. Wichert S, et al. Bioinformatics. 2004 Jan 1;20(1):5-20. doi: 10.1093/bioinformatics/btg364. Bioinformatics. 2004. PMID: 14693803
AVAILABILITY: The approach has been implemented in the R package GeneTS available from http://www.stat.uni-muenchen.de/~strimmer/software.html under the terms of the GNU General Public License....
AVAILABILITY: The approach has been implemented in the R package GeneTS available from http://www.stat.uni-muenchen.de/~strimmer/soft …
TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing.
Schmidt HA, Strimmer K, Vingron M, von Haeseler A. Schmidt HA, et al. Bioinformatics. 2002 Mar;18(3):502-4. doi: 10.1093/bioinformatics/18.3.502. Bioinformatics. 2002. PMID: 11934758
SUMMARY: TREE-PUZZLE is a program package for quartet-based maximum-likelihood phylogenetic analysis (formerly PUZZLE, Strimmer and von Haeseler, Mol. ...
SUMMARY: TREE-PUZZLE is a program package for quartet-based maximum-likelihood phylogenetic analysis (formerly PUZZLE, Strimmer and v …
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