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Huvariome: a web server resource of whole genome next-generation sequencing allelic frequencies to aid in pathological candidate gene selection.
Stubbs A, McClellan EA, Horsman S, Hiltemann SD, Palli I, Nouwens S, Koning AH, Hoogland F, Reumers J, Heijsman D, Swagemakers S, Kremer A, Meijerink J, Lambrechts D, van der Spek PJ. Stubbs A, et al. J Clin Bioinforma. 2012 Nov 19;2(1):19. doi: 10.1186/2043-9113-2-19. J Clin Bioinforma. 2012. PMID: 23164068 Free PMC article.
iFUSE: integrated fusion gene explorer.
Hiltemann S, McClellan EA, van Nijnatten J, Horsman S, Palli I, Teles Alves I, Hartjes T, Trapman J, van der Spek P, Jenster G, Stubbs A. Hiltemann S, et al. Among authors: stubbs a. Bioinformatics. 2013 Jul 1;29(13):1700-1. doi: 10.1093/bioinformatics/btt252. Epub 2013 May 9. Bioinformatics. 2013. PMID: 23661695
Low-Molecular-Weight Protein Tyrosine Phosphatase Predicts Prostate Cancer Outcome by Increasing the Metastatic Potential.
Ruela-de-Sousa RR, Hoekstra E, Hoogland AM, Souza Queiroz KC, Peppelenbosch MP, Stubbs AP, Pelizzaro-Rocha K, van Leenders GJLH, Jenster G, Aoyama H, Ferreira CV, Fuhler GM. Ruela-de-Sousa RR, et al. Among authors: stubbs ap. Eur Urol. 2016 Apr;69(4):710-719. doi: 10.1016/j.eururo.2015.06.040. Epub 2015 Jul 7. Eur Urol. 2016. PMID: 26159288
FuMa: reporting overlap in RNA-seq detected fusion genes.
Hoogstrate Y, Böttcher R, Hiltemann S, van der Spek PJ, Jenster G, Stubbs AP. Hoogstrate Y, et al. Bioinformatics. 2016 Apr 15;32(8):1226-8. doi: 10.1093/bioinformatics/btv721. Epub 2015 Dec 10. Bioinformatics. 2016. PMID: 26656567
A new generation of tools that identify fusion genes in RNA-seq data is limited in either sensitivity and or specificity. ...FuMa matches 10% more fusion genes compared with exact gene matching due to overlapping genes and accepts intermediate output files that allow a
A new generation of tools that identify fusion genes in RNA-seq data is limited in either sensitivity and or specificity. ...FuMa mat
310 results