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151 results
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A likelihood approach to analysis of network data.
Wiuf C, Brameier M, Hagberg O, Stumpf MP. Wiuf C, et al. Among authors: stumpf mp. Proc Natl Acad Sci U S A. 2006 May 16;103(20):7566-70. doi: 10.1073/pnas.0600061103. Epub 2006 May 8. Proc Natl Acad Sci U S A. 2006. PMID: 16682633 Free PMC article.
Bayesian design of synthetic biological systems.
Barnes CP, Silk D, Sheng X, Stumpf MP. Barnes CP, et al. Among authors: stumpf mp. Proc Natl Acad Sci U S A. 2011 Sep 13;108(37):15190-5. doi: 10.1073/pnas.1017972108. Epub 2011 Aug 29. Proc Natl Acad Sci U S A. 2011. PMID: 21876136 Free PMC article.
Estimating the size of the human interactome.
Stumpf MP, Thorne T, de Silva E, Stewart R, An HJ, Lappe M, Wiuf C. Stumpf MP, et al. Proc Natl Acad Sci U S A. 2008 May 13;105(19):6959-64. doi: 10.1073/pnas.0708078105. Epub 2008 May 12. Proc Natl Acad Sci U S A. 2008. PMID: 18474861 Free PMC article.
Comparative analysis of the Saccharomyces cerevisiae and Caenorhabditis elegans protein interaction networks.
Agrafioti I, Swire J, Abbott J, Huntley D, Butcher S, Stumpf MP. Agrafioti I, et al. Among authors: stumpf mp. BMC Evol Biol. 2005 Mar 18;5:23. doi: 10.1186/1471-2148-5-23. BMC Evol Biol. 2005. PMID: 15777474 Free PMC article.
Topological sensitivity analysis for systems biology.
Babtie AC, Kirk P, Stumpf MP. Babtie AC, et al. Among authors: stumpf mp. Proc Natl Acad Sci U S A. 2014 Dec 30;111(52):18507-12. doi: 10.1073/pnas.1414026112. Epub 2014 Dec 15. Proc Natl Acad Sci U S A. 2014. PMID: 25512544 Free PMC article.
Subnets of scale-free networks are not scale-free: sampling properties of networks.
Stumpf MP, Wiuf C, May RM. Stumpf MP, et al. Proc Natl Acad Sci U S A. 2005 Mar 22;102(12):4221-4. doi: 10.1073/pnas.0501179102. Epub 2005 Mar 14. Proc Natl Acad Sci U S A. 2005. PMID: 15767579 Free PMC article.
Graph spectral analysis of protein interaction network evolution.
Thorne T, Stumpf MP. Thorne T, et al. Among authors: stumpf mp. J R Soc Interface. 2012 Oct 7;9(75):2653-66. doi: 10.1098/rsif.2012.0220. Epub 2012 May 2. J R Soc Interface. 2012. PMID: 22552917 Free PMC article.
Incomplete and noisy network data as a percolation process.
Stumpf MP, Wiuf C. Stumpf MP, et al. J R Soc Interface. 2010 Oct 6;7(51):1411-9. doi: 10.1098/rsif.2010.0044. Epub 2010 Apr 8. J R Soc Interface. 2010. PMID: 20378609 Free PMC article.
Using likelihood-free inference to compare evolutionary dynamics of the protein networks of H. pylori and P. falciparum.
Ratmann O, Jørgensen O, Hinkley T, Stumpf M, Richardson S, Wiuf C. Ratmann O, et al. PLoS Comput Biol. 2007 Nov;3(11):e230. doi: 10.1371/journal.pcbi.0030230. Epub 2007 Oct 9. PLoS Comput Biol. 2007. PMID: 18052538 Free PMC article.
Mapping the parameters of prion-induced neuropathology.
Stumpf MP, Krakauer DC. Stumpf MP, et al. Proc Natl Acad Sci U S A. 2000 Sep 12;97(19):10573-7. doi: 10.1073/pnas.180317097. Proc Natl Acad Sci U S A. 2000. PMID: 10962032 Free PMC article.
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