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Meta-QC-Chain: comprehensive and fast quality control method for metagenomic data.
Zhou Q, Su X, Jing G, Ning K. Zhou Q, et al. Among authors: su x. Genomics Proteomics Bioinformatics. 2014 Feb;12(1):52-6. doi: 10.1016/j.gpb.2014.01.002. Epub 2014 Feb 4. Genomics Proteomics Bioinformatics. 2014. PMID: 24508279 Free PMC article.
SNP calling using genotype model selection on high-throughput sequencing data.
You N, Murillo G, Su X, Zeng X, Xu J, Ning K, Zhang S, Zhu J, Cui X. You N, et al. Among authors: su x. Bioinformatics. 2012 Mar 1;28(5):643-50. doi: 10.1093/bioinformatics/bts001. Epub 2012 Jan 16. Bioinformatics. 2012. PMID: 22253293 Free PMC article.
Meta-Storms: efficient search for similar microbial communities based on a novel indexing scheme and similarity score for metagenomic data.
Su X, Xu J, Ning K. Su X, et al. Bioinformatics. 2012 Oct 1;28(19):2493-501. doi: 10.1093/bioinformatics/bts470. Epub 2012 Jul 26. Bioinformatics. 2012. PMID: 22843983
Parallel-META: efficient metagenomic data analysis based on high-performance computation.
Su X, Xu J, Ning K. Su X, et al. BMC Syst Biol. 2012;6 Suppl 1(Suppl 1):S16. doi: 10.1186/1752-0509-6-S1-S16. Epub 2012 Jul 16. BMC Syst Biol. 2012. PMID: 23046922 Free PMC article.
MetaSee: an interactive and extendable visualization toolbox for metagenomic sample analysis and comparison.
Song B, Su X, Xu J, Ning K. Song B, et al. Among authors: su x. PLoS One. 2012;7(11):e48998. doi: 10.1371/journal.pone.0048998. Epub 2012 Nov 8. PLoS One. 2012. PMID: 23145044 Free PMC article.
QC-Chain: fast and holistic quality control method for next-generation sequencing data.
Zhou Q, Su X, Wang A, Xu J, Ning K. Zhou Q, et al. Among authors: su x. PLoS One. 2013;8(4):e60234. doi: 10.1371/journal.pone.0060234. Epub 2013 Apr 2. PLoS One. 2013. PMID: 23565205 Free PMC article.
Nannochloropsis plastid and mitochondrial phylogenomes reveal organelle diversification mechanism and intragenus phylotyping strategy in microalgae.
Wei L, Xin Y, Wang D, Jing X, Zhou Q, Su X, Jia J, Ning K, Chen F, Hu Q, Xu J. Wei L, et al. Among authors: su x. BMC Genomics. 2013 Aug 5;14:534. doi: 10.1186/1471-2164-14-534. BMC Genomics. 2013. PMID: 23915326 Free PMC article.
GPU-Meta-Storms: computing the structure similarities among massive amount of microbial community samples using GPU.
Su X, Wang X, Jing G, Ning K. Su X, et al. Bioinformatics. 2014 Apr 1;30(7):1031-3. doi: 10.1093/bioinformatics/btt736. Epub 2013 Dec 19. Bioinformatics. 2014. PMID: 24363375
Parallel-META 2.0: enhanced metagenomic data analysis with functional annotation, high performance computing and advanced visualization.
Su X, Pan W, Song B, Xu J, Ning K. Su X, et al. PLoS One. 2014 Mar 3;9(3):e89323. doi: 10.1371/journal.pone.0089323. eCollection 2014. PLoS One. 2014. PMID: 24595159 Free PMC article.
[Meta-Mesh: metagenomic data analysis system].
Su X, Song B, Wang X, Ma X, Xu J, Ning K. Su X, et al. Sheng Wu Gong Cheng Xue Bao. 2014 Jan;30(1):6-17. Sheng Wu Gong Cheng Xue Bao. 2014. PMID: 24818475 Chinese.
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