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QSpec: online control and data analysis system for single-cell Raman spectroscopy.
Ren L, Su X, Wang Y, Xu J, Ning K. Ren L, et al. Among authors: su x. PeerJ. 2014 Jun 26;2:e436. doi: 10.7717/peerj.436. eCollection 2014. PeerJ. 2014. PMID: 25024908 Free PMC article.
Meta-Storms: efficient search for similar microbial communities based on a novel indexing scheme and similarity score for metagenomic data.
Su X, Xu J, Ning K. Su X, et al. Bioinformatics. 2012 Oct 1;28(19):2493-501. doi: 10.1093/bioinformatics/bts470. Epub 2012 Jul 26. Bioinformatics. 2012. PMID: 22843983
Parallel-META: efficient metagenomic data analysis based on high-performance computation.
Su X, Xu J, Ning K. Su X, et al. BMC Syst Biol. 2012;6 Suppl 1(Suppl 1):S16. doi: 10.1186/1752-0509-6-S1-S16. Epub 2012 Jul 16. BMC Syst Biol. 2012. PMID: 23046922 Free PMC article.
QC-Chain: fast and holistic quality control method for next-generation sequencing data.
Zhou Q, Su X, Wang A, Xu J, Ning K. Zhou Q, et al. Among authors: su x. PLoS One. 2013;8(4):e60234. doi: 10.1371/journal.pone.0060234. Epub 2013 Apr 2. PLoS One. 2013. PMID: 23565205 Free PMC article.
GPU-Meta-Storms: computing the structure similarities among massive amount of microbial community samples using GPU.
Su X, Wang X, Jing G, Ning K. Su X, et al. Bioinformatics. 2014 Apr 1;30(7):1031-3. doi: 10.1093/bioinformatics/btt736. Epub 2013 Dec 19. Bioinformatics. 2014. PMID: 24363375
Meta-QC-Chain: comprehensive and fast quality control method for metagenomic data.
Zhou Q, Su X, Jing G, Ning K. Zhou Q, et al. Among authors: su x. Genomics Proteomics Bioinformatics. 2014 Feb;12(1):52-6. doi: 10.1016/j.gpb.2014.01.002. Epub 2014 Feb 4. Genomics Proteomics Bioinformatics. 2014. PMID: 24508279 Free PMC article.
Parallel-META 2.0: enhanced metagenomic data analysis with functional annotation, high performance computing and advanced visualization.
Su X, Pan W, Song B, Xu J, Ning K. Su X, et al. PLoS One. 2014 Mar 3;9(3):e89323. doi: 10.1371/journal.pone.0089323. eCollection 2014. PLoS One. 2014. PMID: 24595159 Free PMC article.
Biological ingredient analysis of traditional Chinese medicine preparation based on high-throughput sequencing: the story for Liuwei Dihuang Wan.
Cheng X, Su X, Chen X, Zhao H, Bo C, Xu J, Bai H, Ning K. Cheng X, et al. Among authors: su x. Sci Rep. 2014 Jun 3;4:5147. doi: 10.1038/srep05147. Sci Rep. 2014. PMID: 24888649 Free PMC article.
Rapid comparison and correlation analysis among massive number of microbial community samples based on MDV data model.
Su X, Hu J, Huang S, Ning K. Su X, et al. Sci Rep. 2014 Sep 17;4:6393. doi: 10.1038/srep06393. Sci Rep. 2014. PMID: 25227622 Free PMC article.
Assessment of quality control approaches for metagenomic data analysis.
Zhou Q, Su X, Ning K. Zhou Q, et al. Among authors: su x. Sci Rep. 2014 Nov 7;4:6957. doi: 10.1038/srep06957. Sci Rep. 2014. PMID: 25376098 Free PMC article.
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