Sueoka N - Search Results

1

DNA G+C content of the third codon position and codon usage biases of human genes.

Sueoka N, Kawanishi Y. Sueoka N, et al. Gene. 2000 Dec 30;261(1):53-62. doi: 10.1016/s0378-1119(00)00480-7. Gene. 2000. PMID: 11164037

A previous study of the human genome (846 genes analyzed) has shown that, in the major range of the G+C content in the third codon position (0.25-0.75), biases from the Parity Rule 2 (PR2) among the synonymous codons of the four-codon amino acids are similar except in the highest …

A previous study of the human genome (846 genes analyzed) has shown that, in the major range of the G+C content in the third codon position …

2

Wide intra-genomic G+C heterogeneity in human and chicken is mainly due to strand-symmetric directional mutation pressures: dGTP-oxidation and symmetric cytosine-deamination hypotheses.

Sueoka N. Sueoka N. Gene. 2002 Oct 30;300(1-2):141-54. doi: 10.1016/s0378-1119(02)01046-6. Gene. 2002. PMID: 12468095

3

CodonExplorer: an online tool for analyzing codon usage and sequence composition, scaling from genes to genomes.

Hamady M, Wilson SA, Zaneveld J, Sueoka N, Knight R. Hamady M, et al. Among authors: sueoka n. Bioinformatics. 2009 May 15;25(10):1331-2. doi: 10.1093/bioinformatics/btp141. Epub 2009 Mar 11. Bioinformatics. 2009. PMID: 19279067 Free PMC article.

4

CodonExplorer: an interactive online database for the analysis of codon usage and sequence composition.

Zaneveld J, Hamady M, Sueoka N, Knight R. Zaneveld J, et al. Among authors: sueoka n. Methods Mol Biol. 2009;537:207-32. doi: 10.1007/978-1-59745-251-9_10. Methods Mol Biol. 2009. PMID: 19378146 Free PMC article.

5

Intra-strand biases in bacteriophage T4 genome.

Kano-Sueoka T, Lobry JR, Sueoka N. Kano-Sueoka T, et al. Among authors: sueoka n. Gene. 1999 Sep 30;238(1):59-64. doi: 10.1016/s0378-1119(99)00296-6. Gene. 1999. PMID: 10570984

6

Directional mutation pressure, mutator mutations, and dynamics of molecular evolution.

Sueoka N. Sueoka N. J Mol Evol. 1993 Aug;37(2):137-53. doi: 10.1007/BF02407349. J Mol Evol. 1993. PMID: 8411203

7

Intrastrand parity rules of DNA base composition and usage biases of synonymous codons.

Sueoka N. Sueoka N. J Mol Evol. 1995 Mar;40(3):318-25. doi: 10.1007/BF00163236. J Mol Evol. 1995. PMID: 7723058

8

Directional mutation pressure and neutral molecular evolution.

Sueoka N. Sueoka N. Proc Natl Acad Sci U S A. 1988 Apr;85(8):2653-7. doi: 10.1073/pnas.85.8.2653. Proc Natl Acad Sci U S A. 1988. PMID: 3357886 Free PMC article.

9

Directional mutation pressure, selective constraints, and genetic equilibria.

Sueoka N. Sueoka N. J Mol Evol. 1992 Feb;34(2):95-114. doi: 10.1007/BF00182387. J Mol Evol. 1992. PMID: 1556753 Review.

10

In vitro type II binding of chromosomal DNA to membrane in Bacillus subtilis.

Sato Y, McCollum M, McKenzie T, Laffan J, Zuberi A, Sueoka N. Sato Y, et al. Among authors: sueoka n. J Bacteriol. 1991 Dec;173(23):7732-5. doi: 10.1128/jb.173.23.7732-7735.1991. J Bacteriol. 1991. PMID: 1938973 Free PMC article.

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