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The retinal conformation and its environment in rhodopsin in light of a new 2.2 A crystal structure.
Okada T, Sugihara M, Bondar AN, Elstner M, Entel P, Buss V. Okada T, et al. Among authors: sugihara m. J Mol Biol. 2004 Sep 10;342(2):571-83. doi: 10.1016/j.jmb.2004.07.044. J Mol Biol. 2004. PMID: 15327956
Structural elements of the signal propagation pathway in squid rhodopsin and bovine rhodopsin.
Sugihara M, Fujibuchi W, Suwa M. Sugihara M, et al. J Phys Chem B. 2011 May 19;115(19):6172-9. doi: 10.1021/jp1101785. Epub 2011 Apr 21. J Phys Chem B. 2011. PMID: 21510671
Dynamics of bovine opsin bound to G-protein fragments.
Sugihara M, Suwa M, Bondar AN. Sugihara M, et al. J Struct Biol. 2014 Oct;188(1):79-86. doi: 10.1016/j.jsb.2014.08.001. Epub 2014 Aug 17. J Struct Biol. 2014. PMID: 25138898
Origin and consequences of steric strain in the rhodopsin binding pocket.
Sugihara M, Hufen J, Buss V. Sugihara M, et al. Biochemistry. 2006 Jan 24;45(3):801-10. doi: 10.1021/bi0515624. Biochemistry. 2006. PMID: 16411756
11-cis-retinal protonated Schiff base: influence of the protein environment on the geometry of the rhodopsin chromophore.
Sugihara M, Buss V, Entel P, Elstner M, Frauenheim T. Sugihara M, et al. Biochemistry. 2002 Dec 24;41(51):15259-66. doi: 10.1021/bi020533f. Biochemistry. 2002. PMID: 12484764
Thr94 and Wat2b effect protonation of the retinal chromophore in rhodopsin.
Buss V, Sugihara M, Entel P, Hafner J. Buss V, et al. Among authors: sugihara m. Angew Chem Int Ed Engl. 2003 Jul 21;42(28):3245-7. doi: 10.1002/anie.200351034. Angew Chem Int Ed Engl. 2003. PMID: 12876733 No abstract available.
9-Demethylrhodopsin: theoretical evidence for a relaxed batho intermediate.
Sugihara M, Buss V. Sugihara M, et al. Biochemistry. 2008 Dec 30;47(52):13733-5. doi: 10.1021/bi801986p. Biochemistry. 2008. PMID: 19063606
Origin of spectral tuning in rhodopsin--it is not the binding pocket.
Sekharan S, Sugihara M, Buss V. Sekharan S, et al. Among authors: sugihara m. Angew Chem Int Ed Engl. 2007;46(1-2):269-71. doi: 10.1002/anie.200603306. Angew Chem Int Ed Engl. 2007. PMID: 17120281 No abstract available.
Identification of a binding element for the cytoplasmic regulator FROUNT in the membrane-proximal C-terminal region of chemokine receptors CCR2 and CCR5.
Toda E, Terashima Y, Esaki K, Yoshinaga S, Sugihara M, Kofuku Y, Shimada I, Suwa M, Kanegasaki S, Terasawa H, Matsushima K. Toda E, et al. Among authors: sugihara m. Biochem J. 2014 Jan 15;457(2):313-22. doi: 10.1042/BJ20130827. Biochem J. 2014. PMID: 24128342
Protein assistance in the photoisomerization of rhodopsin and 9-cis-rhodopsin--insights from experiment and theory.
Sekharan S, Sugihara M, Weingart O, Okada T, Buss V. Sekharan S, et al. Among authors: sugihara m. J Am Chem Soc. 2007 Feb 7;129(5):1052-4. doi: 10.1021/ja066970p. J Am Chem Soc. 2007. PMID: 17263385 No abstract available.
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