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An efficient cis-element discovery method using multiple sequence comparisons based on evolutionary relationships.
Sumiyama K, Kim CB, Ruddle FH. Sumiyama K, et al. Genomics. 2001 Jan 15;71(2):260-2. doi: 10.1006/geno.2000.6422. Genomics. 2001. PMID: 11161821
Phylogenetic analysis of the mammalian Hoxc8 non-coding region.
Kim CB, Shashikant CS, Sumiyama K, Wang WC, Amemiya CT, Ruddle FH. Kim CB, et al. Among authors: sumiyama k. J Struct Funct Genomics. 2003;3(1-4):195-9. J Struct Funct Genomics. 2003. PMID: 12836698
The role of gene duplication in the evolution and function of the vertebrate Dlx/distal-less bigene clusters.
Sumiyama K, Irvine SQ, Ruddle FH. Sumiyama K, et al. J Struct Funct Genomics. 2003;3(1-4):151-9. J Struct Funct Genomics. 2003. PMID: 12836694 Review.
Regulation of Dlx3 gene expression in visceral arches by evolutionarily conserved enhancer elements.
Sumiyama K, Ruddle FH. Sumiyama K, et al. Proc Natl Acad Sci U S A. 2003 Apr 1;100(7):4030-4. doi: 10.1073/pnas.0530119100. Epub 2003 Mar 17. Proc Natl Acad Sci U S A. 2003. PMID: 12642674 Free PMC article.
Genomic structure and functional control of the Dlx3-7 bigene cluster.
Sumiyama K, Irvine SQ, Stock DW, Weiss KM, Kawasaki K, Shimizu N, Shashikant CS, Miller W, Ruddle FH. Sumiyama K, et al. Proc Natl Acad Sci U S A. 2002 Jan 22;99(2):780-5. doi: 10.1073/pnas.012584999. Epub 2002 Jan 15. Proc Natl Acad Sci U S A. 2002. PMID: 11792834 Free PMC article.
Genomic organization of the genes Gtf2ird1, Gtf2i, and Ncf1 at the mouse chromosome 5 region syntenic to the human chromosome 7q11.23 Williams syndrome critical region.
Bayarsaihan D, Dunai J, Greally JM, Kawasaki K, Sumiyama K, Enkhmandakh B, Shimizu N, Ruddle FH. Bayarsaihan D, et al. Among authors: sumiyama k. Genomics. 2002 Jan;79(1):137-43. doi: 10.1006/geno.2001.6674. Genomics. 2002. PMID: 11827466
A simple and highly efficient transgenesis method in mice with the Tol2 transposon system and cytoplasmic microinjection.
Sumiyama K, Kawakami K, Yagita K. Sumiyama K, et al. Genomics. 2010 May;95(5):306-11. doi: 10.1016/j.ygeno.2010.02.006. Epub 2010 Feb 26. Genomics. 2010. PMID: 20219670
Transposon-mediated BAC transgenesis in zebrafish and mice.
Suster ML, Sumiyama K, Kawakami K. Suster ML, et al. Among authors: sumiyama k. BMC Genomics. 2009 Oct 16;10:477. doi: 10.1186/1471-2164-10-477. BMC Genomics. 2009. PMID: 19832998 Free PMC article.
A series of ENU-induced single-base substitutions in a long-range cis-element altering Sonic hedgehog expression in the developing mouse limb bud.
Masuya H, Sezutsu H, Sakuraba Y, Sagai T, Hosoya M, Kaneda H, Miura I, Kobayashi K, Sumiyama K, Shimizu A, Nagano J, Yokoyama H, Kaneko S, Sakurai N, Okagaki Y, Noda T, Wakana S, Gondo Y, Shiroishi T. Masuya H, et al. Among authors: sumiyama k. Genomics. 2007 Feb;89(2):207-14. doi: 10.1016/j.ygeno.2006.09.005. Epub 2006 Oct 13. Genomics. 2007. PMID: 17049204
Members of a novel gene family, Gsdm, are expressed exclusively in the epithelium of the skin and gastrointestinal tract in a highly tissue-specific manner.
Tamura M, Tanaka S, Fujii T, Aoki A, Komiyama H, Ezawa K, Sumiyama K, Sagai T, Shiroishi T. Tamura M, et al. Among authors: sumiyama k. Genomics. 2007 May;89(5):618-29. doi: 10.1016/j.ygeno.2007.01.003. Epub 2007 Mar 12. Genomics. 2007. PMID: 17350798
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