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Ribosomal Database Project: data and tools for high throughput rRNA analysis.
Cole JR, Wang Q, Fish JA, Chai B, McGarrell DM, Sun Y, Brown CT, Porras-Alfaro A, Kuske CR, Tiedje JM. Cole JR, et al. Among authors: sun y. Nucleic Acids Res. 2014 Jan;42(Database issue):D633-42. doi: 10.1093/nar/gkt1244. Epub 2013 Nov 27. Nucleic Acids Res. 2014. PMID: 24288368 Free PMC article.
Designing filters for fast-known NcRNA identification.
Sun Y, Buhler J, Yuan C. Sun Y, et al. IEEE/ACM Trans Comput Biol Bioinform. 2012 May-Jun;9(3):774-87. doi: 10.1109/TCBB.2011.149. IEEE/ACM Trans Comput Biol Bioinform. 2012. PMID: 22084145
Efficient known ncRNA search including pseudoknots.
Yuan C, Sun Y. Yuan C, et al. Among authors: sun y. BMC Bioinformatics. 2013;14 Suppl 2(Suppl 2):S25. doi: 10.1186/1471-2105-14-S2-S25. Epub 2013 Jan 21. BMC Bioinformatics. 2013. PMID: 23369049 Free PMC article.
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