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945 results

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Assembly algorithms for next-generation sequencing data.
Miller JR, Koren S, Sutton G. Miller JR, et al. Among authors: sutton g. Genomics. 2010 Jun;95(6):315-27. doi: 10.1016/j.ygeno.2010.03.001. Epub 2010 Mar 6. Genomics. 2010. PMID: 20211242 Free PMC article. Review.
Consensus generation and variant detection by Celera Assembler.
Denisov G, Walenz B, Halpern AL, Miller J, Axelrod N, Levy S, Sutton G. Denisov G, et al. Among authors: sutton g. Bioinformatics. 2008 Apr 15;24(8):1035-40. doi: 10.1093/bioinformatics/btn074. Epub 2008 Mar 4. Bioinformatics. 2008. PMID: 18321888
Aggressive assembly of pyrosequencing reads with mates.
Miller JR, Delcher AL, Koren S, Venter E, Walenz BP, Brownley A, Johnson J, Li K, Mobarry C, Sutton G. Miller JR, et al. Among authors: sutton g. Bioinformatics. 2008 Dec 15;24(24):2818-24. doi: 10.1093/bioinformatics/btn548. Epub 2008 Oct 24. Bioinformatics. 2008. PMID: 18952627 Free PMC article.
An algorithm for automated closure during assembly.
Koren S, Miller JR, Walenz BP, Sutton G. Koren S, et al. Among authors: sutton g. BMC Bioinformatics. 2010 Sep 10;11:457. doi: 10.1186/1471-2105-11-457. BMC Bioinformatics. 2010. PMID: 20831800 Free PMC article.
A draft genome sequence for the Ixodes scapularis cell line, ISE6.
Miller JR, Koren S, Dilley KA, Harkins DM, Stockwell TB, Shabman RS, Sutton GG. Miller JR, et al. Among authors: sutton gg. F1000Res. 2018 Mar 8;7:297. doi: 10.12688/f1000research.13635.1. eCollection 2018. F1000Res. 2018. PMID: 29707202 Free PMC article.
Genomic insights into the Ixodes scapularis tick vector of Lyme disease.
Gulia-Nuss M, Nuss AB, Meyer JM, Sonenshine DE, Roe RM, Waterhouse RM, Sattelle DB, de la Fuente J, Ribeiro JM, Megy K, Thimmapuram J, Miller JR, Walenz BP, Koren S, Hostetler JB, Thiagarajan M, Joardar VS, Hannick LI, Bidwell S, Hammond MP, Young S, Zeng Q, Abrudan JL, Almeida FC, Ayllón N, Bhide K, Bissinger BW, Bonzon-Kulichenko E, Buckingham SD, Caffrey DR, Caimano MJ, Croset V, Driscoll T, Gilbert D, Gillespie JJ, Giraldo-Calderón GI, Grabowski JM, Jiang D, Khalil SMS, Kim D, Kocan KM, Koči J, Kuhn RJ, Kurtti TJ, Lees K, Lang EG, Kennedy RC, Kwon H, Perera R, Qi Y, Radolf JD, Sakamoto JM, Sánchez-Gracia A, Severo MS, Silverman N, Šimo L, Tojo M, Tornador C, Van Zee JP, Vázquez J, Vieira FG, Villar M, Wespiser AR, Yang Y, Zhu J, Arensburger P, Pietrantonio PV, Barker SC, Shao R, Zdobnov EM, Hauser F, Grimmelikhuijzen CJP, Park Y, Rozas J, Benton R, Pedra JHF, Nelson DR, Unger MF, Tubio JMC, Tu Z, Robertson HM, Shumway M, Sutton G, Wortman JR, Lawson D, Wikel SK, Nene VM, Fraser CM, Collins FH, Birren B, Nelson KE, Caler E, Hill CA. Gulia-Nuss M, et al. Among authors: sutton g. Nat Commun. 2016 Feb 9;7:10507. doi: 10.1038/ncomms10507. Nat Commun. 2016. PMID: 26856261 Free PMC article.
ThurGood: evaluating assembly-to-assembly mapping.
Shatkay H, Miller J, Mobarry C, Flanigan M, Yooseph S, Sutton G. Shatkay H, et al. Among authors: sutton g. J Comput Biol. 2004;11(5):800-11. doi: 10.1089/cmb.2004.11.800. J Comput Biol. 2004. PMID: 15700403
The bonobo genome compared with the chimpanzee and human genomes.
Prüfer K, Munch K, Hellmann I, Akagi K, Miller JR, Walenz B, Koren S, Sutton G, Kodira C, Winer R, Knight JR, Mullikin JC, Meader SJ, Ponting CP, Lunter G, Higashino S, Hobolth A, Dutheil J, Karakoç E, Alkan C, Sajjadian S, Catacchio CR, Ventura M, Marques-Bonet T, Eichler EE, André C, Atencia R, Mugisha L, Junhold J, Patterson N, Siebauer M, Good JM, Fischer A, Ptak SE, Lachmann M, Symer DE, Mailund T, Schierup MH, Andrés AM, Kelso J, Pääbo S. Prüfer K, et al. Among authors: sutton g. Nature. 2012 Jun 28;486(7404):527-31. doi: 10.1038/nature11128. Nature. 2012. PMID: 22722832 Free PMC article.
Gene and alternative splicing annotation with AIR.
Florea L, Di Francesco V, Miller J, Turner R, Yao A, Harris M, Walenz B, Mobarry C, Merkulov GV, Charlab R, Dew I, Deng Z, Istrail S, Li P, Sutton G. Florea L, et al. Among authors: sutton g. Genome Res. 2005 Jan;15(1):54-66. doi: 10.1101/gr.2889405. Genome Res. 2005. PMID: 15632090 Free PMC article.
945 results