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Single-cell transcriptomics identifies CD44 as a marker and regulator of endothelial to haematopoietic transition.
Oatley M, Bölükbası ÖV, Svensson V, Shvartsman M, Ganter K, Zirngibl K, Pavlovich PV, Milchevskaya V, Foteva V, Natarajan KN, Baying B, Benes V, Patil KR, Teichmann SA, Lancrin C. Oatley M, et al. Among authors: svensson v. Nat Commun. 2020 Jan 29;11(1):586. doi: 10.1038/s41467-019-14171-5. Nat Commun. 2020. PMID: 31996681 Free PMC article.
Power analysis of single-cell RNA-sequencing experiments.
Svensson V, Natarajan KN, Ly LH, Miragaia RJ, Labalette C, Macaulay IC, Cvejic A, Teichmann SA. Svensson V, et al. Nat Methods. 2017 Apr;14(4):381-387. doi: 10.1038/nmeth.4220. Epub 2017 Mar 6. Nat Methods. 2017. PMID: 28263961 Free PMC article.
SpatialDE: identification of spatially variable genes.
Svensson V, Teichmann SA, Stegle O. Svensson V, et al. Nat Methods. 2018 May;15(5):343-346. doi: 10.1038/nmeth.4636. Epub 2018 Mar 19. Nat Methods. 2018. PMID: 29553579 Free PMC article.
The technology and biology of single-cell RNA sequencing.
Kolodziejczyk AA, Kim JK, Svensson V, Marioni JC, Teichmann SA. Kolodziejczyk AA, et al. Among authors: svensson v. Mol Cell. 2015 May 21;58(4):610-20. doi: 10.1016/j.molcel.2015.04.005. Mol Cell. 2015. PMID: 26000846 Free article. Review.
Single-cell analysis at the threshold.
Chen X, Love JC, Navin NE, Pachter L, Stubbington MJ, Svensson V, Sweedler JV, Teichmann SA. Chen X, et al. Among authors: svensson v. Nat Biotechnol. 2016 Nov 8;34(11):1111-1118. doi: 10.1038/nbt.3721. Nat Biotechnol. 2016. PMID: 27824834 No abstract available.
Computational approaches for interpreting scRNA-seq data.
Rostom R, Svensson V, Teichmann SA, Kar G. Rostom R, et al. Among authors: svensson v. FEBS Lett. 2017 Aug;591(15):2213-2225. doi: 10.1002/1873-3468.12684. Epub 2017 Jun 12. FEBS Lett. 2017. PMID: 28524227 Free PMC article. Review.
An atlas of mouse CD4(+) T cell transcriptomes.
Stubbington MJ, Mahata B, Svensson V, Deonarine A, Nissen JK, Betz AG, Teichmann SA. Stubbington MJ, et al. Among authors: svensson v. Biol Direct. 2015 Apr 3;10:14. doi: 10.1186/s13062-015-0045-x. Biol Direct. 2015. PMID: 25886751 Free PMC article.
Single-cell analysis of CD4+ T-cell differentiation reveals three major cell states and progressive acceleration of proliferation.
Proserpio V, Piccolo A, Haim-Vilmovsky L, Kar G, Lönnberg T, Svensson V, Pramanik J, Natarajan KN, Zhai W, Zhang X, Donati G, Kayikci M, Kotar J, McKenzie AN, Montandon R, Billker O, Woodhouse S, Cicuta P, Nicodemi M, Teichmann SA. Proserpio V, et al. Among authors: svensson v. Genome Biol. 2016 May 12;17:103. doi: 10.1186/s13059-016-0957-5. Genome Biol. 2016. PMID: 27176874 Free PMC article.
66 results