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Single-cell transcriptomics identifies CD44 as a marker and regulator of endothelial to haematopoietic transition.
Oatley M, Bölükbası ÖV, Svensson V, Shvartsman M, Ganter K, Zirngibl K, Pavlovich PV, Milchevskaya V, Foteva V, Natarajan KN, Baying B, Benes V, Patil KR, Teichmann SA, Lancrin C. Oatley M, et al. Among authors: Svensson V. Nat Commun. 2020 Jan 29;11(1):586. doi: 10.1038/s41467-019-14171-5. Nat Commun. 2020. PMID: 31996681 Free PMC article.
The technology and biology of single-cell RNA sequencing.
Kolodziejczyk AA, Kim JK, Svensson V, Marioni JC, Teichmann SA. Kolodziejczyk AA, et al. Among authors: Svensson V. Mol Cell. 2015 May 21;58(4):610-20. doi: 10.1016/j.molcel.2015.04.005. Mol Cell. 2015. PMID: 26000846 Review.
Single-cell analysis at the threshold.
Chen X, Love JC, Navin NE, Pachter L, Stubbington MJ, Svensson V, Sweedler JV, Teichmann SA. Chen X, et al. Among authors: Svensson V. Nat Biotechnol. 2016 Nov 8;34(11):1111-1118. doi: 10.1038/nbt.3721. Nat Biotechnol. 2016. PMID: 27824834 No abstract available.
Power analysis of single-cell RNA-sequencing experiments.
Svensson V, Natarajan KN, Ly LH, Miragaia RJ, Labalette C, Macaulay IC, Cvejic A, Teichmann SA. Svensson V, et al. Nat Methods. 2017 Apr;14(4):381-387. doi: 10.1038/nmeth.4220. Epub 2017 Mar 6. Nat Methods. 2017. PMID: 28263961 Free PMC article.
Single-cell RNA-sequencing resolves self-antigen expression during mTEC development.
Miragaia RJ, Zhang X, Gomes T, Svensson V, Ilicic T, Henriksson J, Kar G, Lönnberg T. Miragaia RJ, et al. Among authors: Svensson V. Sci Rep. 2018 Jan 12;8(1):685. doi: 10.1038/s41598-017-19100-4. Sci Rep. 2018. PMID: 29330484 Free PMC article.
Exponential scaling of single-cell RNA-seq in the past decade.
Svensson V, Vento-Tormo R, Teichmann SA. Svensson V, et al. Nat Protoc. 2018 Apr;13(4):599-604. doi: 10.1038/nprot.2017.149. Epub 2018 Mar 1. Nat Protoc. 2018. PMID: 29494575
SpatialDE: identification of spatially variable genes.
Svensson V, Teichmann SA, Stegle O. Svensson V, et al. Nat Methods. 2018 May;15(5):343-346. doi: 10.1038/nmeth.4636. Epub 2018 Mar 19. Nat Methods. 2018. PMID: 29553579 Free PMC article.
Droplet scRNA-seq is not zero-inflated.
Svensson V. Svensson V. Nat Biotechnol. 2020 Feb;38(2):147-150. doi: 10.1038/s41587-019-0379-5. Nat Biotechnol. 2020. PMID: 31937974 No abstract available.
An atlas of mouse CD4(+) T cell transcriptomes.
Stubbington MJ, Mahata B, Svensson V, Deonarine A, Nissen JK, Betz AG, Teichmann SA. Stubbington MJ, et al. Among authors: Svensson V. Biol Direct. 2015 Apr 3;10:14. doi: 10.1186/s13062-015-0045-x. Biol Direct. 2015. PMID: 25886751 Free PMC article.
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