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The PhytoClust tool for metabolic gene clusters discovery in plant genomes.
Töpfer N, Fuchs LM, Aharoni A. Töpfer N, et al. Nucleic Acids Res. 2017 Jul 7;45(12):7049-7063. doi: 10.1093/nar/gkx404. Nucleic Acids Res. 2017. PMID: 28486689 Free PMC article.
iReMet-flux: constraint-based approach for integrating relative metabolite levels into a stoichiometric metabolic models.
Sajitz-Hermstein M, Töpfer N, Kleessen S, Fernie AR, Nikoloski Z. Sajitz-Hermstein M, et al. Among authors: topfer n. Bioinformatics. 2016 Sep 1;32(17):i755-i762. doi: 10.1093/bioinformatics/btw465. Bioinformatics. 2016. PMID: 27587698
Integration of genome-scale modeling and transcript profiling reveals metabolic pathways underlying light and temperature acclimation in Arabidopsis.
Töpfer N, Caldana C, Grimbs S, Willmitzer L, Fernie AR, Nikoloski Z. Töpfer N, et al. Plant Cell. 2013 Apr;25(4):1197-211. doi: 10.1105/tpc.112.108852. Epub 2013 Apr 23. Plant Cell. 2013. PMID: 23613196 Free PMC article.
Label-free deep shotgun proteomics reveals protein dynamics during tomato fruit tissues development.
Szymanski J, Levin Y, Savidor A, Breitel D, Chappell-Maor L, Heinig U, Töpfer N, Aharoni A. Szymanski J, et al. Among authors: topfer n. Plant J. 2017 Apr;90(2):396-417. doi: 10.1111/tpj.13490. Epub 2017 Mar 22. Plant J. 2017. PMID: 28112434 Free article.
Integration of metabolomics data into metabolic networks.
Töpfer N, Kleessen S, Nikoloski Z. Töpfer N, et al. Front Plant Sci. 2015 Feb 17;6:49. doi: 10.3389/fpls.2015.00049. eCollection 2015. Front Plant Sci. 2015. PMID: 25741348 Free PMC article. Review.
Variability of metabolite levels is linked to differential metabolic pathways in Arabidopsis's responses to abiotic stresses.
Töpfer N, Scossa F, Fernie A, Nikoloski Z. Töpfer N, et al. PLoS Comput Biol. 2014 Jun 19;10(6):e1003656. doi: 10.1371/journal.pcbi.1003656. eCollection 2014 Jun. PLoS Comput Biol. 2014. PMID: 24946036 Free PMC article.
Metabolite profiling and integrative modeling reveal metabolic constraints for carbon partitioning under nitrogen starvation in the green algae Haematococcus pluvialis.
Recht L, Töpfer N, Batushansky A, Sikron N, Gibon Y, Fait A, Nikoloski Z, Boussiba S, Zarka A. Recht L, et al. Among authors: topfer n. J Biol Chem. 2014 Oct 31;289(44):30387-403. doi: 10.1074/jbc.M114.555144. Epub 2014 Sep 2. J Biol Chem. 2014. PMID: 25183014 Free PMC article.
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