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Year Number of Results
2007 1
2009 4
2010 3
2011 2
2020 0
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9 results
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Page 1
Systems and Synthetic biology: tackling genetic networks and complex diseases.
Cuccato G, Della Gatta G, di Bernardo D. Cuccato G, et al. Heredity (Edinb). 2009 Jun;102(6):527-32. doi: 10.1038/hdy.2009.18. Epub 2009 Mar 4. Heredity (Edinb). 2009. PMID: 19259117 Free article. Review.
Reverse engineering gene network identifies new dysferlin-interacting proteins.
Cacciottolo M, Belcastro V, Laval S, Bushby K, di Bernardo D, Nigro V. Cacciottolo M, et al. J Biol Chem. 2011 Feb 18;286(7):5404-13. doi: 10.1074/jbc.M110.173559. Epub 2010 Nov 30. J Biol Chem. 2011. PMID: 21119217 Free PMC article.
Identifying network of drug mode of action by gene expression profiling.
Iorio F, Tagliaferri R, di Bernardo D. Iorio F, et al. J Comput Biol. 2009 Feb;16(2):241-51. doi: 10.1089/cmb.2008.10TT. J Comput Biol. 2009. PMID: 19183001
Linear matrix inequalities approach to reconstruction of biological networks.
Cosentino C, Curatola W, Montefusco F, Bansal M, di Bernardo D, Amato F. Cosentino C, et al. IET Syst Biol. 2007 May;1(3):164-73. doi: 10.1049/iet-syb:20060054. IET Syst Biol. 2007. PMID: 17591175
A yeast synthetic network for in vivo assessment of reverse-engineering and modeling approaches.
Cantone I, Marucci L, Iorio F, Ricci MA, Belcastro V, Bansal M, Santini S, di Bernardo M, di Bernardo D, Cosma MP. Cantone I, et al. Cell. 2009 Apr 3;137(1):172-81. doi: 10.1016/j.cell.2009.01.055. Epub 2009 Mar 26. Cell. 2009. PMID: 19327819 Free article.
Discovery of drug mode of action and drug repositioning from transcriptional responses.
Iorio F, Bosotti R, Scacheri E, Belcastro V, Mithbaokar P, Ferriero R, Murino L, Tagliaferri R, Brunetti-Pierri N, Isacchi A, di Bernardo D. Iorio F, et al. Proc Natl Acad Sci U S A. 2010 Aug 17;107(33):14621-6. doi: 10.1073/pnas.1000138107. Epub 2010 Aug 2. Proc Natl Acad Sci U S A. 2010. PMID: 20679242 Free PMC article.
Design and construction of a versatile synthetic network for bistable gene expression in mammalian systems.
Polynikis A, Cuccato G, Criscuolo S, Hogan SJ, Di Bernardo M, Di Bernardo D. Polynikis A, et al. J Comput Biol. 2011 Feb;18(2):195-203. doi: 10.1089/cmb.2010.0208. J Comput Biol. 2011. PMID: 21314458
A parallel implementation of the network identification by multiple regression (NIR) algorithm to reverse-engineer regulatory gene networks.
Gregoretti F, Belcastro V, di Bernardo D, Oliva G. Gregoretti F, et al. PLoS One. 2010 Apr 21;5(4):e10179. doi: 10.1371/journal.pone.0010179. PLoS One. 2010. PMID: 20422008 Free PMC article.
NIRest: a tool for gene network and mode of action inference.
Lauria M, Iorio F, di Bernardo D. Lauria M, et al. Ann N Y Acad Sci. 2009 Mar;1158:257-64. doi: 10.1111/j.1749-6632.2008.03761.x. Ann N Y Acad Sci. 2009. PMID: 19348647