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Identifying network of drug mode of action by gene expression profiling.
Iorio F, Tagliaferri R, di Bernardo D. Iorio F, et al. Among authors: tagliaferri r. J Comput Biol. 2009 Feb;16(2):241-51. doi: 10.1089/cmb.2008.10TT. J Comput Biol. 2009. PMID: 19183001
Discovery of drug mode of action and drug repositioning from transcriptional responses.
Iorio F, Bosotti R, Scacheri E, Belcastro V, Mithbaokar P, Ferriero R, Murino L, Tagliaferri R, Brunetti-Pierri N, Isacchi A, di Bernardo D. Iorio F, et al. Among authors: tagliaferri r. Proc Natl Acad Sci U S A. 2010 Aug 17;107(33):14621-6. doi: 10.1073/pnas.1000138107. Epub 2010 Aug 2. Proc Natl Acad Sci U S A. 2010. PMID: 20679242 Free PMC article.
Interactive data analysis and clustering of genomic data.
Ciaramella A, Cocozza S, Iorio F, Miele G, Napolitano F, Pinelli M, Raiconi G, Tagliaferri R. Ciaramella A, et al. Among authors: tagliaferri r. Neural Netw. 2008 Mar-Apr;21(2-3):368-78. doi: 10.1016/j.neunet.2007.12.026. Epub 2007 Dec 31. Neural Netw. 2008. PMID: 18255261
A multi-step approach to time series analysis and gene expression clustering.
Amato R, Ciaramella A, Deniskina N, Del Mondo C, di Bernardo D, Donalek C, Longo G, Mangano G, Miele G, Raiconi G, Staiano A, Tagliaferri R. Amato R, et al. Among authors: tagliaferri r. Bioinformatics. 2006 Mar 1;22(5):589-96. doi: 10.1093/bioinformatics/btk026. Epub 2006 Jan 5. Bioinformatics. 2006. PMID: 16397005
Robust and sparse correlation matrix estimation for the analysis of high-dimensional genomics data.
Serra A, Coretto P, Fratello M, Tagliaferri R, Stegle O. Serra A, et al. Among authors: tagliaferri r. Bioinformatics. 2018 Feb 15;34(4):625-634. doi: 10.1093/bioinformatics/btx642. Bioinformatics. 2018. PMID: 29040390
A multi-view genomic data simulator.
Fratello M, Serra A, Fortino V, Raiconi G, Tagliaferri R, Greco D. Fratello M, et al. Among authors: tagliaferri r. BMC Bioinformatics. 2015 May 12;16:151. doi: 10.1186/s12859-015-0577-1. BMC Bioinformatics. 2015. PMID: 25962835 Free PMC article.
A novel neural network-based survival analysis model.
Eleuteri A, Tagliaferri R, Milano L, De Placido S, De Laurentiis M. Eleuteri A, et al. Among authors: tagliaferri r. Neural Netw. 2003 Jun-Jul;16(5-6):855-64. doi: 10.1016/S0893-6080(03)00098-4. Neural Netw. 2003. PMID: 12850044
Fuzzy neural networks for classification and detection of anomalies.
Meneganti M, Saviello FS, Tagliaferri R. Meneganti M, et al. Among authors: tagliaferri r. IEEE Trans Neural Netw. 1998;9(5):848-61. doi: 10.1109/72.712157. IEEE Trans Neural Netw. 1998. PMID: 18255771
A novel information geometric approach to variable selection in MLP networks.
Eleuteri A, Tagliaferri R, Milano L. Eleuteri A, et al. Among authors: tagliaferri r. Neural Netw. 2005 Dec;18(10):1309-18. doi: 10.1016/j.neunet.2005.01.008. Epub 2005 Jun 29. Neural Netw. 2005. PMID: 15990274
Multi-View Ensemble Classification of Brain Connectivity Images for Neurodegeneration Type Discrimination.
Fratello M, Caiazzo G, Trojsi F, Russo A, Tedeschi G, Tagliaferri R, Esposito F. Fratello M, et al. Among authors: tagliaferri r. Neuroinformatics. 2017 Apr;15(2):199-213. doi: 10.1007/s12021-017-9324-2. Neuroinformatics. 2017. PMID: 28210983 Free PMC article.
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