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SMaSH: a benchmarking toolkit for human genome variant calling.
Talwalkar A, Liptrap J, Newcomb J, Hartl C, Terhorst J, Curtis K, Bresler M, Song YS, Jordan MI, Patterson D. Talwalkar A, et al. Bioinformatics. 2014 Oct;30(19):2787-95. doi: 10.1093/bioinformatics/btu345. Epub 2014 Jun 3. Bioinformatics. 2014. PMID: 24894505 Free PMC article.
Inferring population structure in biobank-scale genomic data.
Chiu AM, Molloy EK, Tan Z, Talwalkar A, Sankararaman S. Chiu AM, et al. Among authors: talwalkar a. Am J Hum Genet. 2022 Apr 7;109(4):727-737. doi: 10.1016/j.ajhg.2022.02.015. Epub 2022 Mar 16. Am J Hum Genet. 2022. PMID: 35298920 Free PMC article.
A large-scale evaluation of computational protein function prediction.
Radivojac P, Clark WT, Oron TR, Schnoes AM, Wittkop T, Sokolov A, Graim K, Funk C, Verspoor K, Ben-Hur A, Pandey G, Yunes JM, Talwalkar AS, Repo S, Souza ML, Piovesan D, Casadio R, Wang Z, Cheng J, Fang H, Gough J, Koskinen P, Törönen P, Nokso-Koivisto J, Holm L, Cozzetto D, Buchan DW, Bryson K, Jones DT, Limaye B, Inamdar H, Datta A, Manjari SK, Joshi R, Chitale M, Kihara D, Lisewski AM, Erdin S, Venner E, Lichtarge O, Rentzsch R, Yang H, Romero AE, Bhat P, Paccanaro A, Hamp T, Kaßner R, Seemayer S, Vicedo E, Schaefer C, Achten D, Auer F, Boehm A, Braun T, Hecht M, Heron M, Hönigschmid P, Hopf TA, Kaufmann S, Kiening M, Krompass D, Landerer C, Mahlich Y, Roos M, Björne J, Salakoski T, Wong A, Shatkay H, Gatzmann F, Sommer I, Wass MN, Sternberg MJ, Škunca N, Supek F, Bošnjak M, Panov P, Džeroski S, Šmuc T, Kourmpetis YA, van Dijk AD, ter Braak CJ, Zhou Y, Gong Q, Dong X, Tian W, Falda M, Fontana P, Lavezzo E, Di Camillo B, Toppo S, Lan L, Djuric N, Guo Y, Vucetic S, Bairoch A, Linial M, Babbitt PC, Brenner SE, Orengo C, Rost B, Mooney SD, Friedberg I. Radivojac P, et al. Among authors: talwalkar as. Nat Methods. 2013 Mar;10(3):221-7. doi: 10.1038/nmeth.2340. Epub 2013 Jan 27. Nat Methods. 2013. PMID: 23353650 Free PMC article.
Perspectives on incorporating expert feedback into model updates.
Chen V, Bhatt U, Heidari H, Weller A, Talwalkar A. Chen V, et al. Among authors: talwalkar a. Patterns (N Y). 2023 Jul 14;4(7):100780. doi: 10.1016/j.patter.2023.100780. eCollection 2023 Jul 14. Patterns (N Y). 2023. PMID: 37521050 Free PMC article. Review.
23 results