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Serial Femtosecond Crystallography and Ultrafast Absorption Spectroscopy of the Photoswitchable Fluorescent Protein IrisFP.
Colletier JP, Sliwa M, Gallat FX, Sugahara M, Guillon V, Schirò G, Coquelle N, Woodhouse J, Roux L, Gotthard G, Royant A, Uriarte LM, Ruckebusch C, Joti Y, Byrdin M, Mizohata E, Nango E, Tanaka T, Tono K, Yabashi M, Adam V, Cammarata M, Schlichting I, Bourgeois D, Weik M. Colletier JP, et al. Among authors: tanaka t. J Phys Chem Lett. 2016 Mar 3;7(5):882-7. doi: 10.1021/acs.jpclett.5b02789. Epub 2016 Feb 25. J Phys Chem Lett. 2016. PMID: 26866390
Anomalous signal from S atoms in protein crystallographic data from an X-ray free-electron laser.
Barends TR, Foucar L, Shoeman RL, Bari S, Epp SW, Hartmann R, Hauser G, Huth M, Kieser C, Lomb L, Motomura K, Nagaya K, Schmidt C, Strecker R, Anielski D, Boll R, Erk B, Fukuzawa H, Hartmann E, Hatsui T, Holl P, Inubushi Y, Ishikawa T, Kassemeyer S, Kaiser C, Koeck F, Kunishima N, Kurka M, Rolles D, Rudek B, Rudenko A, Sato T, Schroeter CD, Soltau H, Strueder L, Tanaka T, Togashi T, Tono K, Ullrich J, Yase S, Wada SI, Yao M, Yabashi M, Ueda K, Schlichting I. Barends TR, et al. Among authors: tanaka t. Acta Crystallogr D Biol Crystallogr. 2013 May;69(Pt 5):838-42. doi: 10.1107/S0907444913002448. Epub 2013 Apr 11. Acta Crystallogr D Biol Crystallogr. 2013. PMID: 23633593
Integrated database of information from structural genomics experiments.
Asada Y, Sugahara M, Mizutani H, Naitow H, Tanaka T, Matsuura Y, Agari Y, Ebihara A, Shinkai A, Kuramitsu S, Yokoyama S, Kaminuma E, Kobayashi N, Nishikata K, Shimoyama S, Toyoda T, Ishikawa T, Kunishima N. Asada Y, et al. Among authors: tanaka t. Acta Crystallogr D Biol Crystallogr. 2013 May;69(Pt 5):914-9. doi: 10.1107/S0907444913001728. Epub 2013 Apr 19. Acta Crystallogr D Biol Crystallogr. 2013. PMID: 23633602
Grease matrix as a versatile carrier of proteins for serial crystallography.
Sugahara M, Mizohata E, Nango E, Suzuki M, Tanaka T, Masuda T, Tanaka R, Shimamura T, Tanaka Y, Suno C, Ihara K, Pan D, Kakinouchi K, Sugiyama S, Murata M, Inoue T, Tono K, Song C, Park J, Kameshima T, Hatsui T, Joti Y, Yabashi M, Iwata S. Sugahara M, et al. Among authors: tanaka t, tanaka r, tanaka y. Nat Methods. 2015 Jan;12(1):61-3. doi: 10.1038/nmeth.3172. Epub 2014 Nov 10. Nat Methods. 2015. PMID: 25384243 Free article.
Diverse application platform for hard X-ray diffraction in SACLA (DAPHNIS): application to serial protein crystallography using an X-ray free-electron laser.
Tono K, Nango E, Sugahara M, Song C, Park J, Tanaka T, Tanaka R, Joti Y, Kameshima T, Ono S, Hatsui T, Mizohata E, Suzuki M, Shimamura T, Tanaka Y, Iwata S, Yabashi M. Tono K, et al. Among authors: tanaka t, tanaka r, tanaka y. J Synchrotron Radiat. 2015 May;22(3):532-7. doi: 10.1107/S1600577515004464. Epub 2015 Apr 16. J Synchrotron Radiat. 2015. PMID: 25931065 Free PMC article.
Native sulfur/chlorine SAD phasing for serial femtosecond crystallography.
Nakane T, Song C, Suzuki M, Nango E, Kobayashi J, Masuda T, Inoue S, Mizohata E, Nakatsu T, Tanaka T, Tanaka R, Shimamura T, Tono K, Joti Y, Kameshima T, Hatsui T, Yabashi M, Nureki O, Iwata S, Sugahara M. Nakane T, et al. Among authors: tanaka t, tanaka r. Acta Crystallogr D Biol Crystallogr. 2015 Dec 1;71(Pt 12):2519-25. doi: 10.1107/S139900471501857X. Epub 2015 Nov 27. Acta Crystallogr D Biol Crystallogr. 2015. PMID: 26627659 Free PMC article.
The room temperature crystal structure of a bacterial phytochrome determined by serial femtosecond crystallography.
Edlund P, Takala H, Claesson E, Henry L, Dods R, Lehtivuori H, Panman M, Pande K, White T, Nakane T, Berntsson O, Gustavsson E, Båth P, Modi V, Roy-Chowdhury S, Zook J, Berntsen P, Pandey S, Poudyal I, Tenboer J, Kupitz C, Barty A, Fromme P, Koralek JD, Tanaka T, Spence J, Liang M, Hunter MS, Boutet S, Nango E, Moffat K, Groenhof G, Ihalainen J, Stojković EA, Schmidt M, Westenhoff S. Edlund P, et al. Among authors: tanaka t. Sci Rep. 2016 Oct 19;6:35279. doi: 10.1038/srep35279. Sci Rep. 2016. PMID: 27756898 Free PMC article.
A three-dimensional movie of structural changes in bacteriorhodopsin.
Nango E, Royant A, Kubo M, Nakane T, Wickstrand C, Kimura T, Tanaka T, Tono K, Song C, Tanaka R, Arima T, Yamashita A, Kobayashi J, Hosaka T, Mizohata E, Nogly P, Sugahara M, Nam D, Nomura T, Shimamura T, Im D, Fujiwara T, Yamanaka Y, Jeon B, Nishizawa T, Oda K, Fukuda M, Andersson R, Båth P, Dods R, Davidsson J, Matsuoka S, Kawatake S, Murata M, Nureki O, Owada S, Kameshima T, Hatsui T, Joti Y, Schertler G, Yabashi M, Bondar AN, Standfuss J, Neutze R, Iwata S. Nango E, et al. Among authors: tanaka t, tanaka r. Science. 2016 Dec 23;354(6319):1552-1557. doi: 10.1126/science.aah3497. Science. 2016. PMID: 28008064
Protein-ligand complex structure from serial femtosecond crystallography using soaked thermolysin microcrystals and comparison with structures from synchrotron radiation.
Naitow H, Matsuura Y, Tono K, Joti Y, Kameshima T, Hatsui T, Yabashi M, Tanaka R, Tanaka T, Sugahara M, Kobayashi J, Nango E, Iwata S, Kunishima N. Naitow H, et al. Among authors: tanaka t, tanaka r. Acta Crystallogr D Struct Biol. 2017 Aug 1;73(Pt 8):702-709. doi: 10.1107/S2059798317008919. Epub 2017 Jul 31. Acta Crystallogr D Struct Biol. 2017. PMID: 28777085 Free PMC article.
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