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CTCF-Mediated Human 3D Genome Architecture Reveals Chromatin Topology for Transcription.
Tang Z, Luo OJ, Li X, Zheng M, Zhu JJ, Szalaj P, Trzaskoma P, Magalska A, Wlodarczyk J, Ruszczycki B, Michalski P, Piecuch E, Wang P, Wang D, Tian SZ, Penrad-Mobayed M, Sachs LM, Ruan X, Wei CL, Liu ET, Wilczynski GM, Plewczynski D, Li G, Ruan Y. Tang Z, et al. Cell. 2015 Dec 17;163(7):1611-27. doi: 10.1016/j.cell.2015.11.024. Epub 2015 Dec 10. Cell. 2015. PMID: 26686651 Free PMC article.
3D-GNOME: an integrated web service for structural modeling of the 3D genome.
Szalaj P, Michalski PJ, Wróblewski P, Tang Z, Kadlof M, Mazzocco G, Ruan Y, Plewczynski D. Szalaj P, et al. Among authors: tang z. Nucleic Acids Res. 2016 Jul 8;44(W1):W288-93. doi: 10.1093/nar/gkw437. Epub 2016 May 16. Nucleic Acids Res. 2016. PMID: 27185892 Free PMC article.
Methods for comparative ChIA-PET and Hi-C data analysis.
Capurso D, Tang Z, Ruan Y. Capurso D, et al. Among authors: tang z. Methods. 2020 Jan 1;170:69-74. doi: 10.1016/j.ymeth.2019.09.019. Epub 2019 Oct 16. Methods. 2020. PMID: 31629084 Free article. Review.
Interactome maps of mouse gene regulatory domains reveal basic principles of transcriptional regulation.
Kieffer-Kwon KR, Tang Z, Mathe E, Qian J, Sung MH, Li G, Resch W, Baek S, Pruett N, Grøntved L, Vian L, Nelson S, Zare H, Hakim O, Reyon D, Yamane A, Nakahashi H, Kovalchuk AL, Zou J, Joung JK, Sartorelli V, Wei CL, Ruan X, Hager GL, Ruan Y, Casellas R. Kieffer-Kwon KR, et al. Among authors: tang z. Cell. 2013 Dec 19;155(7):1507-20. doi: 10.1016/j.cell.2013.11.039. Cell. 2013. PMID: 24360274 Free PMC article.
The Energetics and Physiological Impact of Cohesin Extrusion.
Vian L, Pękowska A, Rao SSP, Kieffer-Kwon KR, Jung S, Baranello L, Huang SC, El Khattabi L, Dose M, Pruett N, Sanborn AL, Canela A, Maman Y, Oksanen A, Resch W, Li X, Lee B, Kovalchuk AL, Tang Z, Nelson S, Di Pierro M, Cheng RR, Machol I, St Hilaire BG, Durand NC, Shamim MS, Stamenova EK, Onuchic JN, Ruan Y, Nussenzweig A, Levens D, Aiden EL, Casellas R. Vian L, et al. Among authors: tang z. Cell. 2018 May 17;173(5):1165-1178.e20. doi: 10.1016/j.cell.2018.03.072. Epub 2018 Apr 26. Cell. 2018. PMID: 29706548 Free PMC article.
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