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DFAST: a flexible prokaryotic genome annotation pipeline for faster genome publication.
Tanizawa Y, Fujisawa T, Nakamura Y. Tanizawa Y, et al. Bioinformatics. 2018 Mar 15;34(6):1037-1039. doi: 10.1093/bioinformatics/btx713. Bioinformatics. 2018. PMID: 29106469 Free PMC article.
H2DB: a heritability database across multiple species by annotating trait-associated genomic loci.
Kaminuma E, Fujisawa T, Tanizawa Y, Sakamoto N, Kurata N, Shimizu T, Nakamura Y. Kaminuma E, et al. Among authors: tanizawa y. Nucleic Acids Res. 2013 Jan;41(Database issue):D880-4. doi: 10.1093/nar/gks1216. Epub 2012 Nov 27. Nucleic Acids Res. 2013. PMID: 23193255 Free PMC article.
Draft Genome Sequence of Weissella oryzae SG25T, Isolated from Fermented Rice Grains.
Tanizawa Y, Fujisawa T, Mochizuki T, Kaminuma E, Suzuki Y, Nakamura Y, Tohno M. Tanizawa Y, et al. Genome Announc. 2014 Jul 10;2(4):e00667-14. doi: 10.1128/genomeA.00667-14. Genome Announc. 2014. PMID: 25013139 Free PMC article.
Complete genome sequence and analysis of Lactobacillus hokkaidonensis LOOC260(T), a psychrotrophic lactic acid bacterium isolated from silage.
Tanizawa Y, Tohno M, Kaminuma E, Nakamura Y, Arita M. Tanizawa Y, et al. BMC Genomics. 2015 Mar 25;16(1):240. doi: 10.1186/s12864-015-1435-2. BMC Genomics. 2015. PMID: 25879859 Free PMC article.
Comparative genomics of Fructobacillus spp. and Leuconostoc spp. reveals niche-specific evolution of Fructobacillus spp.
Endo A, Tanizawa Y, Tanaka N, Maeno S, Kumar H, Shiwa Y, Okada S, Yoshikawa H, Dicks L, Nakagawa J, Arita M. Endo A, et al. Among authors: tanizawa y. BMC Genomics. 2015 Dec 29;16:1117. doi: 10.1186/s12864-015-2339-x. BMC Genomics. 2015. PMID: 26715526 Free PMC article.
DFAST and DAGA: web-based integrated genome annotation tools and resources.
Tanizawa Y, Fujisawa T, Kaminuma E, Nakamura Y, Arita M. Tanizawa Y, et al. Biosci Microbiota Food Health. 2016;35(4):173-184. doi: 10.12938/bmfh.16-003. Epub 2016 Jul 14. Biosci Microbiota Food Health. 2016. PMID: 27867804 Free PMC article.
DNApod: DNA polymorphism annotation database from next-generation sequence read archives.
Mochizuki T, Tanizawa Y, Fujisawa T, Ohta T, Nikoh N, Shimizu T, Toyoda A, Fujiyama A, Kurata N, Nagasaki H, Kaminuma E, Nakamura Y. Mochizuki T, et al. Among authors: tanizawa y. PLoS One. 2017 Feb 24;12(2):e0172269. doi: 10.1371/journal.pone.0172269. eCollection 2017. PLoS One. 2017. PMID: 28234924 Free PMC article.
Visualization of consensus genome structure without using a reference genome.
Tada I, Tanizawa Y, Arita M. Tada I, et al. Among authors: tanizawa y. BMC Genomics. 2017 Mar 14;18(Suppl 2):208. doi: 10.1186/s12864-017-3499-7. BMC Genomics. 2017. PMID: 28361716 Free PMC article.
Lactobacillus silagincola sp. nov. and Lactobacillus pentosiphilus sp. nov., isolated from silage.
Tohno M, Tanizawa Y, Irisawa T, Masuda T, Sakamoto M, Arita M, Ohkuma M, Kobayashi H. Tohno M, et al. Among authors: tanizawa y. Int J Syst Evol Microbiol. 2017 Sep;67(9):3639-3644. doi: 10.1099/ijsem.0.002196. Epub 2017 Sep 7. Int J Syst Evol Microbiol. 2017. PMID: 28879844
Comparative analysis of probiotic bacteria based on a new definition of core genome.
Satti M, Tanizawa Y, Endo A, Arita M. Satti M, et al. Among authors: tanizawa y. J Bioinform Comput Biol. 2018 Jun;16(3):1840012. doi: 10.1142/S0219720018400127. Epub 2018 Mar 26. J Bioinform Comput Biol. 2018. PMID: 29792377
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