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An immune response gene expression module identifies a good prognosis subtype in estrogen receptor negative breast cancer.
Teschendorff AE, Miremadi A, Pinder SE, Ellis IO, Caldas C. Teschendorff AE, et al. Genome Biol. 2007;8(8):R157. doi: 10.1186/gb-2007-8-8-r157. Genome Biol. 2007. PMID: 17683518 Free PMC article.
Appraising the causal relevance of DNA methylation for risk of lung cancer.
Battram T, Richmond RC, Baglietto L, Haycock PC, Perduca V, Bojesen SE, Gaunt TR, Hemani G, Guida F, Carreras-Torres R, Hung R, Amos CI, Freeman JR, Sandanger TM, Nøst TH, Nordestgaard BG, Teschendorff AE, Polidoro S, Vineis P, Severi G, Hodge AM, Giles GG, Grankvist K, Johansson MB, Johansson M, Davey Smith G, Relton CL. Battram T, et al. Among authors: teschendorff ae. Int J Epidemiol. 2019 Oct 1;48(5):1493-1504. doi: 10.1093/ije/dyz190. Int J Epidemiol. 2019. PMID: 31549173 Free PMC article.
EpiDISH web server: Epigenetic Dissection of Intra-Sample-Heterogeneity with online GUI.
Zheng SC, Breeze CE, Beck S, Dong D, Zhu T, Ma L, Ye W, Zhang G, Teschendorff AE. Zheng SC, et al. Among authors: teschendorff ae. Bioinformatics. 2019 Nov 9:btz833. doi: 10.1093/bioinformatics/btz833. Online ahead of print. Bioinformatics. 2019. PMID: 31710662
Detection of Epigenetic Field Defects Using a Weighted Epigenetic Distance-Based Method.
Wang Y, Qian M, Ruan P, Teschendorff AE, Wang S. Wang Y, et al. Among authors: teschendorff ae. Methods Mol Biol. 2020;2117:109-131. doi: 10.1007/978-1-0716-0301-7_6. Methods Mol Biol. 2020. PMID: 31960375
A variational Bayesian mixture modelling framework for cluster analysis of gene-expression data.
Teschendorff AE, Wang Y, Barbosa-Morais NL, Brenton JD, Caldas C. Teschendorff AE, et al. Bioinformatics. 2005 Jul 1;21(13):3025-33. doi: 10.1093/bioinformatics/bti466. Epub 2005 Apr 28. Bioinformatics. 2005. PMID: 15860564
A 1 Mb minimal amplicon at 8p11-12 in breast cancer identifies new candidate oncogenes.
Garcia MJ, Pole JC, Chin SF, Teschendorff A, Naderi A, Ozdag H, Vias M, Kranjac T, Subkhankulova T, Paish C, Ellis I, Brenton JD, Edwards PA, Caldas C. Garcia MJ, et al. Among authors: teschendorff a. Oncogene. 2005 Aug 4;24(33):5235-45. doi: 10.1038/sj.onc.1208741. Oncogene. 2005. PMID: 15897872
Distribution of breakpoints on chromosome 18 in breast, colorectal, and pancreatic carcinoma cell lines.
Alsop AE, Teschendorff AE, Edwards PA. Alsop AE, et al. Among authors: teschendorff ae. Cancer Genet Cytogenet. 2006 Jan 15;164(2):97-109. doi: 10.1016/j.cancergencyto.2005.09.011. Cancer Genet Cytogenet. 2006. PMID: 16434311
PACK: Profile Analysis using Clustering and Kurtosis to find molecular classifiers in cancer.
Teschendorff AE, Naderi A, Barbosa-Morais NL, Caldas C. Teschendorff AE, et al. Bioinformatics. 2006 Sep 15;22(18):2269-75. doi: 10.1093/bioinformatics/btl174. Epub 2006 May 8. Bioinformatics. 2006. PMID: 16682424
A gene-expression signature to predict survival in breast cancer across independent data sets.
Naderi A, Teschendorff AE, Barbosa-Morais NL, Pinder SE, Green AR, Powe DG, Robertson JF, Aparicio S, Ellis IO, Brenton JD, Caldas C. Naderi A, et al. Among authors: teschendorff ae. Oncogene. 2007 Mar 1;26(10):1507-16. doi: 10.1038/sj.onc.1209920. Epub 2006 Aug 28. Oncogene. 2007. PMID: 16936776
Using array-comparative genomic hybridization to define molecular portraits of primary breast cancers.
Chin SF, Wang Y, Thorne NP, Teschendorff AE, Pinder SE, Vias M, Naderi A, Roberts I, Barbosa-Morais NL, Garcia MJ, Iyer NG, Kranjac T, Robertson JF, Aparicio S, Tavaré S, Ellis I, Brenton JD, Caldas C. Chin SF, et al. Among authors: teschendorff ae. Oncogene. 2007 Mar 22;26(13):1959-70. doi: 10.1038/sj.onc.1209985. Epub 2006 Sep 25. Oncogene. 2007. PMID: 17001317
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