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Efficient de novo assembly of single-cell bacterial genomes from short-read data sets.
Chitsaz H, Yee-Greenbaum JL, Tesler G, Lombardo MJ, Dupont CL, Badger JH, Novotny M, Rusch DB, Fraser LJ, Gormley NA, Schulz-Trieglaff O, Smith GP, Evers DJ, Pevzner PA, Lasken RS. Chitsaz H, et al. Among authors: tesler g. Nat Biotechnol. 2011 Sep 18;29(10):915-21. doi: 10.1038/nbt.1966. Nat Biotechnol. 2011. PMID: 21926975 Free PMC article.
De novo repeat classification and fragment assembly.
Pevzner PA, Tang H, Tesler G. Pevzner PA, et al. Among authors: tesler g. Genome Res. 2004 Sep;14(9):1786-96. doi: 10.1101/gr.2395204. Genome Res. 2004. PMID: 15342561 Free PMC article.
How to apply de Bruijn graphs to genome assembly.
Compeau PE, Pevzner PA, Tesler G. Compeau PE, et al. Among authors: tesler g. Nat Biotechnol. 2011 Nov 8;29(11):987-91. doi: 10.1038/nbt.2023. Nat Biotechnol. 2011. PMID: 22068540 Free PMC article. No abstract available.
Genome of the pathogen Porphyromonas gingivalis recovered from a biofilm in a hospital sink using a high-throughput single-cell genomics platform.
McLean JS, Lombardo MJ, Ziegler MG, Novotny M, Yee-Greenbaum J, Badger JH, Tesler G, Nurk S, Lesin V, Brami D, Hall AP, Edlund A, Allen LZ, Durkin S, Reed S, Torriani F, Nealson KH, Pevzner PA, Friedman R, Venter JC, Lasken RS. McLean JS, et al. Among authors: tesler g. Genome Res. 2013 May;23(5):867-77. doi: 10.1101/gr.150433.112. Epub 2013 Apr 5. Genome Res. 2013. PMID: 23564253 Free PMC article.
Candidate phylum TM6 genome recovered from a hospital sink biofilm provides genomic insights into this uncultivated phylum.
McLean JS, Lombardo MJ, Badger JH, Edlund A, Novotny M, Yee-Greenbaum J, Vyahhi N, Hall AP, Yang Y, Dupont CL, Ziegler MG, Chitsaz H, Allen AE, Yooseph S, Tesler G, Pevzner PA, Friedman RM, Nealson KH, Venter JC, Lasken RS. McLean JS, et al. Among authors: tesler g. Proc Natl Acad Sci U S A. 2013 Jun 25;110(26):E2390-9. doi: 10.1073/pnas.1219809110. Epub 2013 Jun 10. Proc Natl Acad Sci U S A. 2013. PMID: 23754396 Free PMC article.
32 results