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Did you mean the salmonella enterica pat genome (10 results)?
The Salmonella enterica pan-genome.
Jacobsen A, Hendriksen RS, Aaresturp FM, Ussery DW, Friis C. Jacobsen A, et al. Microb Ecol. 2011 Oct;62(3):487-504. doi: 10.1007/s00248-011-9880-1. Epub 2011 Jun 4. Microb Ecol. 2011. PMID: 21643699 Free PMC article. Review.
We compare 45 sequenced S. enterica genomes that are publicly available (22 complete and 23 draft genome sequences). ...All genomes were subjected to standardized gene finding, and the core and pan-genome of Salmonella were estimated to be aroun …
We compare 45 sequenced S. enterica genomes that are publicly available (22 complete and 23 draft genome sequences). ...All ge …
Pan-Genome Analysis of Transcriptional Regulation in Six Salmonella enterica Serovar Typhimurium Strains Reveals Their Different Regulatory Structures.
Yuan Y, Seif Y, Rychel K, Yoo R, Chauhan S, Poudel S, Al-Bulushi T, Palsson BO, Sastry AV. Yuan Y, et al. mSystems. 2022 Dec 20;7(6):e0046722. doi: 10.1128/msystems.00467-22. Epub 2022 Nov 1. mSystems. 2022. PMID: 36317888 Free PMC article.
Thus, by combining pan-genome and transcriptomic analytics, we revealed variations in TRNs across six strains of serovar Typhimurium. IMPORTANCE Salmonella enterica serovar Typhimurium is a pathogen involved in human nontyphoidal infections. ...
Thus, by combining pan-genome and transcriptomic analytics, we revealed variations in TRNs across six strains of serovar Typhi …
Roary: rapid large-scale prokaryote pan genome analysis.
Page AJ, Cummins CA, Hunt M, Wong VK, Reuter S, Holden MT, Fookes M, Falush D, Keane JA, Parkhill J. Page AJ, et al. Bioinformatics. 2015 Nov 15;31(22):3691-3. doi: 10.1093/bioinformatics/btv421. Epub 2015 Jul 20. Bioinformatics. 2015. PMID: 26198102 Free PMC article.
Interrogating these datasets can provide detailed insights into the genetic structure of prokaryotic genomes. We introduce Roary, a tool that rapidly builds large-scale pan genomes, identifying the core and accessory genes. Roary makes construction of the pan gen …
Interrogating these datasets can provide detailed insights into the genetic structure of prokaryotic genomes. We introduce Roary, a tool tha …
Pan-genome Analyses of the Species Salmonella enterica, and Identification of Genomic Markers Predictive for Species, Subspecies, and Serovar.
Laing CR, Whiteside MD, Gannon VPJ. Laing CR, et al. Front Microbiol. 2017 Jul 31;8:1345. doi: 10.3389/fmicb.2017.01345. eCollection 2017. Front Microbiol. 2017. PMID: 28824552 Free PMC article.
We have previously developed the software program Panseq, which identifies the pan-genome among a group of sequences, and the SuperPhy platform, which utilizes this pan-genome information to identify biomarkers that are predictive of groups of bacteria …
We have previously developed the software program Panseq, which identifies the pan-genome among a group of sequences, and the …
Pan-genome Analysis of Ancient and Modern Salmonella enterica Demonstrates Genomic Stability of the Invasive Para C Lineage for Millennia.
Zhou Z, Lundstrøm I, Tran-Dien A, Duchêne S, Alikhan NF, Sergeant MJ, Langridge G, Fotakis AK, Nair S, Stenøien HK, Hamre SS, Casjens S, Christophersen A, Quince C, Thomson NR, Weill FX, Ho SYW, Gilbert MTP, Achtman M. Zhou Z, et al. Curr Biol. 2018 Aug 6;28(15):2420-2428.e10. doi: 10.1016/j.cub.2018.05.058. Epub 2018 Jul 19. Curr Biol. 2018. PMID: 30033331 Free PMC article.
Salmonella enterica serovar Paratyphi C causes enteric (paratyphoid) fever in humans. ...Paratyphi C sequences were recovered from her teeth and bones, suggesting that she died of enteric fever and demonstrating that these bacteria have long caused invasive salmonel …
Salmonella enterica serovar Paratyphi C causes enteric (paratyphoid) fever in humans. ...Paratyphi C sequences were recovered …
Polyphyly in widespread Salmonella enterica serovars and using genomic proximity to choose the best reference genome for bioinformatics analyses.
Cherchame E, Ilango G, Noël V, Cadel-Six S. Cherchame E, et al. Front Public Health. 2022 Sep 8;10:963188. doi: 10.3389/fpubh.2022.963188. eCollection 2022. Front Public Health. 2022. PMID: 36159272 Free PMC article.
Over the past 5 years, whole-genome analysis has led to the high-resolution characterization of clinical and foodborne Salmonella responsible for typhoid fever, foodborne illness or contamination of the agro-food chain. ...For these serovars, it is essential to iden …
Over the past 5 years, whole-genome analysis has led to the high-resolution characterization of clinical and foodborne Salmonella …
Prophage-mediated genome differentiation of the Salmonella Derby ST71 population.
Yu J, Xu X, Wang Y, Zhai X, Pan Z, Jiao X, Zhang Y. Yu J, et al. Microb Genom. 2022 Apr;8(4):000817. doi: 10.1099/mgen.0.000817. Microb Genom. 2022. PMID: 35451954 Free PMC article.
The results demonstrated that the S. Derby ST71 population harbours an open pan-genome, and swine-associated ST71 strains contain many more genes than the poultry-associated strains, mainly attributed to the prophage sequence contents in the genomes. ...This study p …
The results demonstrated that the S. Derby ST71 population harbours an open pan-genome, and swine-associated ST71 strains cont …
The emergence of the tetrathionate reductase operon in the Escherichia coli/Shigella pan-genome.
Adsit FG Jr, Randall TA, Locklear J, Kurtz DM. Adsit FG Jr, et al. Microbiologyopen. 2022 Dec;11(6):e1333. doi: 10.1002/mbo3.1333. Microbiologyopen. 2022. PMID: 36479628 Free PMC article.
The ttr operon is a potent virulence factor for several enteric pathogens, most prominently Salmonella enterica. However, the presence of chromosomally integrated tetrathionate reductase genes does not appear to have been previously reported in wild-type E. coli or …
The ttr operon is a potent virulence factor for several enteric pathogens, most prominently Salmonella enterica. However, the …
Construction of a Pan-Genome Allele Database of Salmonella enterica Serovar Enteritidis for Molecular Subtyping and Disease Cluster Identification.
Liu YY, Chen CC, Chiou CS. Liu YY, et al. Front Microbiol. 2016 Dec 15;7:2010. doi: 10.3389/fmicb.2016.02010. eCollection 2016. Front Microbiol. 2016. PMID: 28018331 Free PMC article.
We built a pan-genome allele database with 395 genomes of Salmonella enterica serovar Enteritidis and developed computer tools for analysis of whole genome sequencing (WGS) data of bacterial isolates for disease cluster identification. ...The wg …
We built a pan-genome allele database with 395 genomes of Salmonella enterica serovar Enteritidis and developed …
Comparative genome analysis of Salmonella enterica serovar Gallinarum biovars Pullorum and Gallinarum decodes strain specific genes.
Vaid RK, Thakur Z, Anand T, Kumar S, Tripathi BN. Vaid RK, et al. PLoS One. 2021 Aug 19;16(8):e0255612. doi: 10.1371/journal.pone.0255612. eCollection 2021. PLoS One. 2021. PMID: 34411120 Free PMC article.
Salmonella enterica serovar Gallinarum biovar Pullorum (bvP) and biovar Gallinarum (bvG) are the etiological agents of pullorum disease (PD) and fowl typhoid (FT) respectively, which cause huge economic losses to poultry industry especially in developing countries i …
Salmonella enterica serovar Gallinarum biovar Pullorum (bvP) and biovar Gallinarum (bvG) are the etiological agents of pulloru …
45 results