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Did you mean the salmonella enterica pat genome (9 results)?
The Salmonella enterica pan-genome.
Jacobsen A, Hendriksen RS, Aaresturp FM, Ussery DW, Friis C. Jacobsen A, et al. Microb Ecol. 2011 Oct;62(3):487-504. doi: 10.1007/s00248-011-9880-1. Epub 2011 Jun 4. Microb Ecol. 2011. PMID: 21643699 Free PMC article. Review.
We compare 45 sequenced S. enterica genomes that are publicly available (22 complete and 23 draft genome sequences). ...All genomes were subjected to standardized gene finding, and the core and pan-genome of Salmonella were estimated to be aroun …
We compare 45 sequenced S. enterica genomes that are publicly available (22 complete and 23 draft genome sequences). ...All ge …
Pan-genome Analysis of Ancient and Modern Salmonella enterica Demonstrates Genomic Stability of the Invasive Para C Lineage for Millennia.
Zhou Z, Lundstrøm I, Tran-Dien A, Duchêne S, Alikhan NF, Sergeant MJ, Langridge G, Fotakis AK, Nair S, Stenøien HK, Hamre SS, Casjens S, Christophersen A, Quince C, Thomson NR, Weill FX, Ho SYW, Gilbert MTP, Achtman M. Zhou Z, et al. Curr Biol. 2018 Aug 6;28(15):2420-2428.e10. doi: 10.1016/j.cub.2018.05.058. Epub 2018 Jul 19. Curr Biol. 2018. PMID: 30033331 Free PMC article.
Salmonella enterica serovar Paratyphi C causes enteric (paratyphoid) fever in humans. ...Paratyphi C sequences were recovered from her teeth and bones, suggesting that she died of enteric fever and demonstrating that these bacteria have long caused invasive salmonel
Salmonella enterica serovar Paratyphi C causes enteric (paratyphoid) fever in humans. ...Paratyphi C sequences were recovered
Roary: rapid large-scale prokaryote pan genome analysis.
Page AJ, Cummins CA, Hunt M, Wong VK, Reuter S, Holden MT, Fookes M, Falush D, Keane JA, Parkhill J. Page AJ, et al. Bioinformatics. 2015 Nov 15;31(22):3691-3. doi: 10.1093/bioinformatics/btv421. Epub 2015 Jul 20. Bioinformatics. 2015. PMID: 26198102 Free PMC article.
Interrogating these datasets can provide detailed insights into the genetic structure of prokaryotic genomes. We introduce Roary, a tool that rapidly builds large-scale pan genomes, identifying the core and accessory genes. Roary makes construction of the pan gen
Interrogating these datasets can provide detailed insights into the genetic structure of prokaryotic genomes. We introduce Roary, a tool tha …
Pan-genome Analyses of the Species Salmonella enterica, and Identification of Genomic Markers Predictive for Species, Subspecies, and Serovar.
Laing CR, Whiteside MD, Gannon VPJ. Laing CR, et al. Front Microbiol. 2017 Jul 31;8:1345. doi: 10.3389/fmicb.2017.01345. eCollection 2017. Front Microbiol. 2017. PMID: 28824552 Free PMC article.
We have previously developed the software program Panseq, which identifies the pan-genome among a group of sequences, and the SuperPhy platform, which utilizes this pan-genome information to identify biomarkers that are predictive of groups of bacteria …
We have previously developed the software program Panseq, which identifies the pan-genome among a group of sequences, and the …
Whole-Genome-Based Survey for Polyphyletic Serovars of Salmonella enterica subsp. enterica Provides New Insights into Public Health Surveillance.
Yin Z, Liu J, Du B, Ruan HH, Huo YX, Du Y, Qiao J. Yin Z, et al. Int J Mol Sci. 2020 Jul 23;21(15):5226. doi: 10.3390/ijms21155226. Int J Mol Sci. 2020. PMID: 32718035 Free PMC article.
Serotyping has traditionally been considered the basis for surveillance of Salmonella, but it cannot distinguish distinct lineages sharing the same serovar that vary in host range, pathogenicity and epidemiology. ...The population of these serovars was defined by extensive …
Serotyping has traditionally been considered the basis for surveillance of Salmonella, but it cannot distinguish distinct lineages sh …
Construction of a Pan-Genome Allele Database of Salmonella enterica Serovar Enteritidis for Molecular Subtyping and Disease Cluster Identification.
Liu YY, Chen CC, Chiou CS. Liu YY, et al. Front Microbiol. 2016 Dec 15;7:2010. doi: 10.3389/fmicb.2016.02010. eCollection 2016. Front Microbiol. 2016. PMID: 28018331 Free PMC article.
We built a pan-genome allele database with 395 genomes of Salmonella enterica serovar Enteritidis and developed computer tools for analysis of whole genome sequencing (WGS) data of bacterial isolates for disease cluster identification. ...The wg …
We built a pan-genome allele database with 395 genomes of Salmonella enterica serovar Enteritidis and developed …
PRAP: Pan Resistome analysis pipeline.
He Y, Zhou X, Chen Z, Deng X, Gehring A, Ou H, Zhang L, Shi X. He Y, et al. BMC Bioinformatics. 2020 Jan 15;21(1):20. doi: 10.1186/s12859-019-3335-y. BMC Bioinformatics. 2020. PMID: 31941435 Free PMC article.
Software tools are readily available for either ARGs identification or pan-genome analysis, but few exist to combine the two functions. ...We demonstrated the performance of PRAP by analyzing the genomes of 26 Salmonella enterica isolates from Shanghai …
Software tools are readily available for either ARGs identification or pan-genome analysis, but few exist to combine the two f …
Large-Scale Genomics Reveals the Genetic Characteristics of Seven Species and Importance of Phylogenetic Distance for Estimating Pan-Genome Size.
Park SC, Lee K, Kim YO, Won S, Chun J. Park SC, et al. Front Microbiol. 2019 Apr 24;10:834. doi: 10.3389/fmicb.2019.00834. eCollection 2019. Front Microbiol. 2019. PMID: 31068915 Free PMC article.
For more than a decade, pan-genome analysis has been applied as an effective method for explaining the genetic contents variation of prokaryotic species. ...This work showed the pan-genomes of all seven species has open property. Additionally, systematic eval …
For more than a decade, pan-genome analysis has been applied as an effective method for explaining the genetic contents variat …
Genome dynamics and evolution of Salmonella Typhi strains from the typhoid-endemic zones.
Baddam R, Kumar N, Shaik S, Lankapalli AK, Ahmed N. Baddam R, et al. Sci Rep. 2014 Dec 12;4:7457. doi: 10.1038/srep07457. Sci Rep. 2014. PMID: 25504040 Free PMC article.
The genomes showed high genetic relatedness with limited opportunity for gene acquisition as evident from pan-genome structure. Given that pseudogenisation is an active process in S. Typhi, we further investigated core and pan-genome profiles of functi …
The genomes showed high genetic relatedness with limited opportunity for gene acquisition as evident from pan-genome structure …
Evaluation of whole genome sequencing for outbreak detection of Salmonella enterica.
Leekitcharoenphon P, Nielsen EM, Kaas RS, Lund O, Aarestrup FM. Leekitcharoenphon P, et al. PLoS One. 2014 Feb 4;9(2):e87991. doi: 10.1371/journal.pone.0087991. eCollection 2014. PLoS One. 2014. PMID: 24505344 Free PMC article.
Salmonella enterica is a common cause of minor and large food borne outbreaks. ...A number of different bioinformatics approaches were applied on the data; including pan-genome tree, k-mer tree, nucleotide difference tree and SNP tree. ...
Salmonella enterica is a common cause of minor and large food borne outbreaks. ...A number of different bioinformatics approac
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