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Did you mean the salmonella enterica pat genome (9 results)?
Pan-genome Analyses of the Species Salmonella enterica, and Identification of Genomic Markers Predictive for Species, Subspecies, and Serovar.
Laing CR, Whiteside MD, Gannon VPJ. Laing CR, et al. Front Microbiol. 2017 Jul 31;8:1345. doi: 10.3389/fmicb.2017.01345. eCollection 2017. Front Microbiol. 2017. PMID: 28824552 Free PMC article.
We have previously developed the software program Panseq, which identifies the pan-genome among a group of sequences, and the SuperPhy platform, which utilizes this pan-genome information to identify biomarkers that are predictive of groups of bacteria …
We have previously developed the software program Panseq, which identifies the pan-genome among a group of sequences, and the …
The Salmonella enterica pan-genome.
Jacobsen A, Hendriksen RS, Aaresturp FM, Ussery DW, Friis C. Jacobsen A, et al. Microb Ecol. 2011 Oct;62(3):487-504. doi: 10.1007/s00248-011-9880-1. Epub 2011 Jun 4. Microb Ecol. 2011. PMID: 21643699 Free PMC article. Review.
Salmonella enterica is divided into four subspecies containing a large number of different serovars, several of which are important zoonotic pathogens and some show a high degree of host specificity or host preference. ...All genomes were subjected to standardized g
Salmonella enterica is divided into four subspecies containing a large number of different serovars, several of which are impo
Pan-genome Analysis of Ancient and Modern Salmonella enterica Demonstrates Genomic Stability of the Invasive Para C Lineage for Millennia.
Zhou Z, Lundstrøm I, Tran-Dien A, Duchêne S, Alikhan NF, Sergeant MJ, Langridge G, Fotakis AK, Nair S, Stenøien HK, Hamre SS, Casjens S, Christophersen A, Quince C, Thomson NR, Weill FX, Ho SYW, Gilbert MTP, Achtman M. Zhou Z, et al. Curr Biol. 2018 Aug 6;28(15):2420-2428.e10. doi: 10.1016/j.cub.2018.05.058. Epub 2018 Jul 19. Curr Biol. 2018. PMID: 30033331 Free PMC article.
Salmonella enterica serovar Paratyphi C causes enteric (paratyphoid) fever in humans. Its presentation can range from asymptomatic infections of the blood stream to gastrointestinal or urinary tract infection or even a fatal septicemia [1]. ...Comparative analyses a
Salmonella enterica serovar Paratyphi C causes enteric (paratyphoid) fever in humans. Its presentation can range from asymptom
Roary: rapid large-scale prokaryote pan genome analysis.
Page AJ, Cummins CA, Hunt M, Wong VK, Reuter S, Holden MT, Fookes M, Falush D, Keane JA, Parkhill J. Page AJ, et al. Bioinformatics. 2015 Nov 15;31(22):3691-3. doi: 10.1093/bioinformatics/btv421. Epub 2015 Jul 20. Bioinformatics. 2015. PMID: 26198102 Free PMC article.
We introduce Roary, a tool that rapidly builds large-scale pan genomes, identifying the core and accessory genes. Roary makes construction of the pan genome of thousands of prokaryote samples possible on a standard desktop without compromising on the accuracy …
We introduce Roary, a tool that rapidly builds large-scale pan genomes, identifying the core and accessory genes. Roary makes constru …
Construction of a Pan-Genome Allele Database of Salmonella enterica Serovar Enteritidis for Molecular Subtyping and Disease Cluster Identification.
Liu YY, Chen CC, Chiou CS. Liu YY, et al. Front Microbiol. 2016 Dec 15;7:2010. doi: 10.3389/fmicb.2016.02010. eCollection 2016. Front Microbiol. 2016. PMID: 28018331 Free PMC article.
We built a pan-genome allele database with 395 genomes of Salmonella enterica serovar Enteritidis and developed computer tools for analysis of whole genome sequencing (WGS) data of bacterial isolates for disease cluster identification. ...Thus, …
We built a pan-genome allele database with 395 genomes of Salmonella enterica serovar Enteritidis and developed …
Genome dynamics and evolution of Salmonella Typhi strains from the typhoid-endemic zones.
Baddam R, Kumar N, Shaik S, Lankapalli AK, Ahmed N. Baddam R, et al. Sci Rep. 2014 Dec 12;4:7457. doi: 10.1038/srep07457. Sci Rep. 2014. PMID: 25504040 Free PMC article.
The genomes showed high genetic relatedness with limited opportunity for gene acquisition as evident from pan-genome structure. ...Typhi, we further investigated core and pan-genome profiles of functional and pseudogenes separately. We observed a decli …
The genomes showed high genetic relatedness with limited opportunity for gene acquisition as evident from pan-genome structure …
Evolution of pan-genomes of Escherichia coli, Shigella spp., and Salmonella enterica.
Gordienko EN, Kazanov MD, Gelfand MS. Gordienko EN, et al. J Bacteriol. 2013 Jun;195(12):2786-92. doi: 10.1128/JB.02285-12. Epub 2013 Apr 12. J Bacteriol. 2013. PMID: 23585535 Free PMC article.
While the pan-genome size is increasing with each new strain, the number of genes present in a fixed fraction of strains stabilizes quickly. ...Comparison of S. enterica and E. coli pan-genomes revealed the existence of a common periphery, that is, gen …
While the pan-genome size is increasing with each new strain, the number of genes present in a fixed fraction of strains stabi …
Evaluation of whole genome sequencing for outbreak detection of Salmonella enterica.
Leekitcharoenphon P, Nielsen EM, Kaas RS, Lund O, Aarestrup FM. Leekitcharoenphon P, et al. PLoS One. 2014 Feb 4;9(2):e87991. doi: 10.1371/journal.pone.0087991. eCollection 2014. PLoS One. 2014. PMID: 24505344 Free PMC article.
Salmonella enterica is a common cause of minor and large food borne outbreaks. To achieve successful and nearly 'real-time' monitoring and identification of outbreaks, reliable sub-typing is essential. ...A number of different bioinformatics approaches were applied
Salmonella enterica is a common cause of minor and large food borne outbreaks. To achieve successful and nearly 'real-time' mo
Large-Scale Genomics Reveals the Genetic Characteristics of Seven Species and Importance of Phylogenetic Distance for Estimating Pan-Genome Size.
Park SC, Lee K, Kim YO, Won S, Chun J. Park SC, et al. Front Microbiol. 2019 Apr 24;10:834. doi: 10.3389/fmicb.2019.00834. eCollection 2019. Front Microbiol. 2019. PMID: 31068915 Free PMC article.
Here, we constructed pan-genomes of seven species in order to elucidate variations in the genetic contents of >27,000 genomes belonging to Streptococcus pneumoniae, Staphylococcus aureus subsp. aureus, Salmonella enterica subsp. enterica, Escherichi …
Here, we constructed pan-genomes of seven species in order to elucidate variations in the genetic contents of >27,000 genomes belo …
PanGeT: Pan-genomics tool.
Yuvaraj I, Sridhar J, Michael D, Sekar K. Yuvaraj I, et al. Gene. 2017 Feb 5;600:77-84. doi: 10.1016/j.gene.2016.11.025. Epub 2016 Nov 13. Gene. 2017. PMID: 27851981
To this end, we have developed a tool, "PanGeT - Pan-genomics Tool" to compute the 'pan-genome' based on comparisons at the genome as well as the proteome levels. This automated tool is implemented using LaTeX libraries for effective visualization of o …
To this end, we have developed a tool, "PanGeT - Pan-genomics Tool" to compute the 'pan-genome' based on comparisons at …
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