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The Genotype-Tissue Expression (GTEx) project.
GTEx Consortium. GTEx Consortium. Nat Genet. 2013 Jun;45(6):580-5. doi: 10.1038/ng.2653. Nat Genet. 2013. PMID: 23715323 Free PMC article.
Most associated variants are not correlated with protein-coding changes, suggesting that polymorphisms in regulatory regions probably contribute to many disease phenotypes. Here we describe the Genotype-Tissue Expression (GTEx) project, which wi …
Most associated variants are not correlated with protein-coding changes, suggesting that polymorphisms in regulatory regions probably contri …
Human genomics. The Genotype-Tissue Expression (GTEx) pilot analysis: multitissue gene regulation in humans.
GTEx Consortium. GTEx Consortium. Science. 2015 May 8;348(6235):648-60. doi: 10.1126/science.1262110. Epub 2015 May 7. Science. 2015. PMID: 25954001 Free PMC article.
We present an analysis of RNA sequencing data from 1641 samples across 43 tissues from 175 individuals, generated as part of the pilot phase of the Genotype-Tissue Expression (GTEx) project. We describe the landscape of gene expression
We present an analysis of RNA sequencing data from 1641 samples across 43 tissues from 175 individuals, generated as part of the pilot phase …
An analysis of aging-related genes derived from the Genotype-Tissue Expression project (GTEx).
Jia K, Cui C, Gao Y, Zhou Y, Cui Q. Jia K, et al. Cell Death Discov. 2018 Aug 20;4:26. doi: 10.1038/s41420-018-0093-y. eCollection 2018. Cell Death Discov. 2018. PMID: 30155276 Free PMC article.
Analyzing transcriptional differences across age might help uncover genetic bases of aging. In this study, 1573 differentially expressed genes, related to chronological age, from the Genotype-Tissue Expression (GTEx) project, were categor …
Analyzing transcriptional differences across age might help uncover genetic bases of aging. In this study, 1573 differentially expressed
Impact of Cognitive Load on Family Decision Makers' Recall and Understanding of Donation Requests for the Genotype-Tissue Expression (GTEx) Project.
Siminoff LA, Wilson-Genderson M, Mosavel M, Barker L, Trgina J, Traino HM, Nathan HM, Hasz RD, Walters G. Siminoff LA, et al. J Clin Ethics. 2018 Spring;29(1):20-30. J Clin Ethics. 2018. PMID: 29565794
Using a quasi-experimental design, the Ethical, Legal, and Social Issues (ELSI) substudy of the Genotype-Tissue Expression (GTEx) project compared the recall and understanding of the donation authorization process of two groups: family members w …
Using a quasi-experimental design, the Ethical, Legal, and Social Issues (ELSI) substudy of the Genotype-Tissue Expression
Development of a consensus approach for return of pathology incidental findings in the Genotype-Tissue Expression (GTEx) project.
Lockhart NC, Weil CJ, Carithers LJ, Koester SE, Little AR, Volpi S, Moore HM, Berkman BE. Lockhart NC, et al. J Med Ethics. 2018 Sep;44(9):643-645. doi: 10.1136/medethics-2017-104691. Epub 2018 Jun 14. J Med Ethics. 2018. PMID: 29903854 Free PMC article.
In the case of deceased biospecimen donors who are also organ and/or tissue transplant donors, pathology incidental findings may be relevant not to family members, but to potential organ or tissue transplant recipients. This paper will describe the ethical implicati …
In the case of deceased biospecimen donors who are also organ and/or tissue transplant donors, pathology incidental findings may be r …
The Genotype-Tissue Expression (GTEx) Project.
Carithers LJ, Moore HM. Carithers LJ, et al. Biopreserv Biobank. 2015 Oct;13(5):307-8. doi: 10.1089/bio.2015.29031.hmm. Biopreserv Biobank. 2015. PMID: 26484569 Free PMC article. No abstract available.
Co-expression networks reveal the tissue-specific regulation of transcription and splicing.
Saha A, Kim Y, Gewirtz ADH, Jo B, Gao C, McDowell IC; GTEx Consortium, Engelhardt BE, Battle A. Saha A, et al. Genome Res. 2017 Nov;27(11):1843-1858. doi: 10.1101/gr.216721.116. Epub 2017 Oct 11. Genome Res. 2017. PMID: 29021288 Free PMC article.
Most network analyses to date have been limited to assessing correlation between total gene expression levels in a single tissue or small sets of tissues. ...We used the Genotype-Tissue Expression (GTEx) project v6 RNA seque …
Most network analyses to date have been limited to assessing correlation between total gene expression levels in a single t
The Genotype-Tissue Expression (GTEx) Project: Linking Clinical Data with Molecular Analysis to Advance Personalized Medicine.
Keen JC, Moore HM. Keen JC, et al. J Pers Med. 2015 Feb 5;5(1):22-9. doi: 10.3390/jpm5010022. J Pers Med. 2015. PMID: 25809799 Free PMC article.
Evaluation of how genetic mutations or variability can directly affect phenotypic outcomes, the development of disease, or determination of a tailored treatment protocol is fundamental to advancing personalized medicine. To understand how a genotype affects gene
Evaluation of how genetic mutations or variability can directly affect phenotypic outcomes, the development of disease, or determination of …
Genetic effects on gene expression across human tissues.
GTEx Consortium; Laboratory, Data Analysis &Coordinating Center (LDACC)—Analysis Working Group; Statistical Methods groups—Analysis Working Group; Enhancing GTEx (eGTEx) groups; NIH Common Fund; NIH/NCI; NIH/NHGRI; NIH/NIMH; NIH/NIDA; Biospecimen Collection Source Site—NDRI; Biospecimen Collection Source Site—RPCI; Biospecimen Core Resource—VARI; Brain Bank Repository—University of Miami Brain Endowment Bank; Leidos Biomedical—Project Management; ELSI Study; Genome Browser Data Integration &Visualization—EBI; Genome Browser Data Integration &Visualization—UCSC Genomics Institute, University of California Santa Cruz; Lead analysts:; Laboratory, Data Analysis &Coordinating Center (LDACC):; NIH program management:; Biospecimen collection:; Pathology:; eQTL manuscript working group:, Battle A, Brown CD, Engelhardt BE, Montgomery SB. GTEx Consortium, et al. Nature. 2017 Oct 11;550(7675):204-213. doi: 10.1038/nature24277. Nature. 2017. PMID: 29022597 Free PMC article.
Characterization of the molecular function of the human genome and its variation across individuals is essential for identifying the cellular mechanisms that underlie human genetic traits and diseases. The Genotype-Tissue Expression (GTEx) project
Characterization of the molecular function of the human genome and its variation across individuals is essential for identifying the cellula …
Dynamic landscape and regulation of RNA editing in mammals.
Tan MH, Li Q, Shanmugam R, Piskol R, Kohler J, Young AN, Liu KI, Zhang R, Ramaswami G, Ariyoshi K, Gupte A, Keegan LP, George CX, Ramu A, Huang N, Pollina EA, Leeman DS, Rustighi A, Goh YPS; GTEx Consortium; Laboratory, Data Analysis &Coordinating Center (LDACC)—Analysis Working Group; Statistical Methods groups—Analysis Working Group; Enhancing GTEx (eGTEx) groups; NIH Common Fund; NIH/NCI; NIH/NHGRI; NIH/NIMH; NIH/NIDA; Biospecimen Collection Source Site—NDRI; Biospecimen Collection Source Site—RPCI; Biospecimen Core Resource—VARI; Brain Bank Repository—University of Miami Brain Endowment Bank; Leidos Biomedical—Project Management; ELSI Study; Genome Browser Data Integration &Visualization—EBI; Genome Browser Data Integration &Visualization—UCSC Genomics Institute, University of California Santa Cruz, Chawla A, Del Sal G, Peltz G, Brunet A, Conrad DF, Samuel CE, O'Connell MA, Walkley CR, Nishikura K, Li JB. Tan MH, et al. Nature. 2017 Oct 11;550(7675):249-254. doi: 10.1038/nature24041. Nature. 2017. PMID: 29022589 Free PMC article.
Here we report dynamic spatiotemporal patterns and new regulators of RNA editing, discovered through an extensive profiling of A-to-I RNA editing in 8,551 human samples (representing 53 body sites from 552 individuals) from the Genotype-Tissue Expression ( …
Here we report dynamic spatiotemporal patterns and new regulators of RNA editing, discovered through an extensive profiling of A-to-I RNA ed …
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