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MCA: Multiresolution Correlation Analysis, a graphical tool for subpopulation identification in single-cell gene expression data.
Feigelman J, Theis FJ, Marr C. Feigelman J, et al. Among authors: theis fj. BMC Bioinformatics. 2014 Jul 11;15:240. doi: 10.1186/1471-2105-15-240. BMC Bioinformatics. 2014. PMID: 25015590 Free PMC article.
An evolutionary and structural characterization of mammalian protein complex organization.
Wong P, Althammer S, Hildebrand A, Kirschner A, Pagel P, Geissler B, Smialowski P, Blöchl F, Oesterheld M, Schmidt T, Strack N, Theis FJ, Ruepp A, Frishman D. Wong P, et al. Among authors: theis fj. BMC Genomics. 2008 Dec 23;9:629. doi: 10.1186/1471-2164-9-629. BMC Genomics. 2008. PMID: 19108706 Free PMC article.
Zebrafish reward mutants reveal novel transcripts mediating the behavioral effects of amphetamine.
Webb KJ, Norton WH, Trümbach D, Meijer AH, Ninkovic J, Topp S, Heck D, Marr C, Wurst W, Theis FJ, Spaink HP, Bally-Cuif L. Webb KJ, et al. Among authors: theis fj. Genome Biol. 2009;10(7):R81. doi: 10.1186/gb-2009-10-7-r81. Epub 2009 Jul 31. Genome Biol. 2009. PMID: 19646228 Free PMC article.
Transforming Boolean models to continuous models: methodology and application to T-cell receptor signaling.
Wittmann DM, Krumsiek J, Saez-Rodriguez J, Lauffenburger DA, Klamt S, Theis FJ. Wittmann DM, et al. Among authors: theis fj. BMC Syst Biol. 2009 Sep 28;3:98. doi: 10.1186/1752-0509-3-98. BMC Syst Biol. 2009. PMID: 19785753 Free PMC article.
Spatial analysis of expression patterns predicts genetic interactions at the mid-hindbrain boundary.
Wittmann DM, Blöchl F, Trümbach D, Wurst W, Prakash N, Theis FJ. Wittmann DM, et al. Among authors: theis fj. PLoS Comput Biol. 2009 Nov;5(11):e1000569. doi: 10.1371/journal.pcbi.1000569. Epub 2009 Nov 20. PLoS Comput Biol. 2009. PMID: 19936059 Free PMC article.
PhenomiR: a knowledgebase for microRNA expression in diseases and biological processes.
Ruepp A, Kowarsch A, Schmidl D, Buggenthin F, Brauner B, Dunger I, Fobo G, Frishman G, Montrone C, Theis FJ. Ruepp A, et al. Among authors: theis fj. Genome Biol. 2010 Jan 20;11(1):R6. doi: 10.1186/gb-2010-11-1-r6. Genome Biol. 2010. PMID: 20089154 Free PMC article.
Intronic microRNAs support their host genes by mediating synergistic and antagonistic regulatory effects.
Lutter D, Marr C, Krumsiek J, Lang EW, Theis FJ. Lutter D, et al. Among authors: theis fj. BMC Genomics. 2010 Apr 6;11:224. doi: 10.1186/1471-2164-11-224. BMC Genomics. 2010. PMID: 20370903 Free PMC article.
Odefy--from discrete to continuous models.
Krumsiek J, Pölsterl S, Wittmann DM, Theis FJ. Krumsiek J, et al. Among authors: theis fj. BMC Bioinformatics. 2010 May 7;11:233. doi: 10.1186/1471-2105-11-233. BMC Bioinformatics. 2010. PMID: 20459647 Free PMC article.
Theoretical analysis of time-to-peak responses in biological reaction networks.
Theis FJ, Bohl S, Klingmüller U. Theis FJ, et al. Bull Math Biol. 2011 May;73(5):978-1003. doi: 10.1007/s11538-010-9548-x. Epub 2010 May 25. Bull Math Biol. 2011. PMID: 20499193
Patterns of subnet usage reveal distinct scales of regulation in the transcriptional regulatory network of Escherichia coli.
Marr C, Theis FJ, Liebovitch LS, Hütt MT. Marr C, et al. Among authors: theis fj. PLoS Comput Biol. 2010 Jul 1;6(7):e1000836. doi: 10.1371/journal.pcbi.1000836. PLoS Comput Biol. 2010. PMID: 20617198 Free PMC article.
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