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TM4: a free, open-source system for microarray data management and analysis.
Saeed AI, Sharov V, White J, Li J, Liang W, Bhagabati N, Braisted J, Klapa M, Currier T, Thiagarajan M, Sturn A, Snuffin M, Rezantsev A, Popov D, Ryltsov A, Kostukovich E, Borisovsky I, Liu Z, Vinsavich A, Trush V, Quackenbush J. Saeed AI, et al. Among authors: Thiagarajan M. Biotechniques. 2003 Feb;34(2):374-8. doi: 10.2144/03342mt01. Biotechniques. 2003. PMID: 12613259 No abstract available.
TM4 microarray software suite.
Saeed AI, Bhagabati NK, Braisted JC, Liang W, Sharov V, Howe EA, Li J, Thiagarajan M, White JA, Quackenbush J. Saeed AI, et al. Among authors: Thiagarajan M. Methods Enzymol. 2006;411:134-93. doi: 10.1016/S0076-6879(06)11009-5. Methods Enzymol. 2006. PMID: 16939790 Review.
Pathema: a clade-specific bioinformatics resource center for pathogen research.
Brinkac LM, Davidsen T, Beck E, Ganapathy A, Caler E, Dodson RJ, Durkin AS, Harkins DM, Lorenzi H, Madupu R, Sebastian Y, Shrivastava S, Thiagarajan M, Orvis J, Sundaram JP, Crabtree J, Galens K, Zhao Y, Inman JM, Montgomery R, Schobel S, Galinsky K, Tanenbaum DM, Resnick A, Zafar N, White O, Sutton G. Brinkac LM, et al. Among authors: Thiagarajan M. Nucleic Acids Res. 2010 Jan;38(Database issue):D408-14. doi: 10.1093/nar/gkp850. Epub 2009 Oct 20. Nucleic Acids Res. 2010. PMID: 19843611 Free PMC article.
Physiogenomic resources for rat models of heart, lung and blood disorders.
Malek RL, Wang HY, Kwitek AE, Greene AS, Bhagabati N, Borchardt G, Cahill L, Currier T, Frank B, Fu X, Hasinoff M, Howe E, Letwin N, Luu TV, Saeed A, Sajadi H, Salzberg SL, Sultana R, Thiagarajan M, Tsai J, Veratti K, White J, Quackenbush J, Jacob HJ, Lee NH. Malek RL, et al. Among authors: Thiagarajan M. Nat Genet. 2006 Feb;38(2):234-9. doi: 10.1038/ng1693. Epub 2006 Jan 15. Nat Genet. 2006. PMID: 16415889
Metagenomic exploration of viruses throughout the Indian Ocean.
Williamson SJ, Allen LZ, Lorenzi HA, Fadrosh DW, Brami D, Thiagarajan M, McCrow JP, Tovchigrechko A, Yooseph S, Venter JC. Williamson SJ, et al. Among authors: Thiagarajan M. PLoS One. 2012;7(10):e42047. doi: 10.1371/journal.pone.0042047. Epub 2012 Oct 17. PLoS One. 2012. PMID: 23082107 Free PMC article.
Influence of nutrients and currents on the genomic composition of microbes across an upwelling mosaic.
Zeigler Allen L, Allen EE, Badger JH, McCrow JP, Paulsen IT, Elbourne LD, Thiagarajan M, Rusch DB, Nealson KH, Williamson SJ, Venter JC, Allen AE. Zeigler Allen L, et al. Among authors: Thiagarajan M. ISME J. 2012 Jul;6(7):1403-14. doi: 10.1038/ismej.2011.201. Epub 2012 Jan 26. ISME J. 2012. PMID: 22278668 Free PMC article.
A metagenomic framework for the study of airborne microbial communities.
Yooseph S, Andrews-Pfannkoch C, Tenney A, McQuaid J, Williamson S, Thiagarajan M, Brami D, Zeigler-Allen L, Hoffman J, Goll JB, Fadrosh D, Glass J, Adams MD, Friedman R, Venter JC. Yooseph S, et al. Among authors: Thiagarajan M. PLoS One. 2013 Dec 11;8(12):e81862. doi: 10.1371/journal.pone.0081862. eCollection 2013. PLoS One. 2013. PMID: 24349140 Free PMC article.
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