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105 results
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Logical modelling of gene regulatory networks with GINsim.
Chaouiya C, Naldi A, Thieffry D. Chaouiya C, et al. Among authors: thieffry d. Methods Mol Biol. 2012;804:463-79. doi: 10.1007/978-1-61779-361-5_23. Methods Mol Biol. 2012. PMID: 22144167
Functional organisation of Escherichia coli transcriptional regulatory network.
Martínez-Antonio A, Janga SC, Thieffry D. Martínez-Antonio A, et al. Among authors: thieffry d. J Mol Biol. 2008 Aug 1;381(1):238-47. doi: 10.1016/j.jmb.2008.05.054. Epub 2008 May 29. J Mol Biol. 2008. PMID: 18599074 Free PMC article.
Segmenting the fly embryo: logical analysis of the role of the segment polarity cross-regulatory module.
Sánchez L, Chaouiya C, Thieffry D. Sánchez L, et al. Among authors: thieffry d. Int J Dev Biol. 2008;52(8):1059-75. doi: 10.1387/ijdb.072439ls. Int J Dev Biol. 2008. PMID: 18956339
Modular logical modelling of the budding yeast cell cycle.
Fauré A, Naldi A, Lopez F, Chaouiya C, Ciliberto A, Thieffry D. Fauré A, et al. Among authors: thieffry d. Mol Biosyst. 2009 Dec;5(12):1787-96. doi: 10.1039/B910101m. Epub 2009 Jul 31. Mol Biosyst. 2009. PMID: 19763337
SBML qualitative models: a model representation format and infrastructure to foster interactions between qualitative modelling formalisms and tools.
Chaouiya C, Bérenguier D, Keating SM, Naldi A, van Iersel MP, Rodriguez N, Dräger A, Büchel F, Cokelaer T, Kowal B, Wicks B, Gonçalves E, Dorier J, Page M, Monteiro PT, von Kamp A, Xenarios I, de Jong H, Hucka M, Klamt S, Thieffry D, Le Novère N, Saez-Rodriguez J, Helikar T. Chaouiya C, et al. Among authors: thieffry d. BMC Syst Biol. 2013 Dec 10;7:135. doi: 10.1186/1752-0509-7-135. BMC Syst Biol. 2013. PMID: 24321545 Free PMC article.
Cooperative development of logical modelling standards and tools with CoLoMoTo.
Naldi A, Monteiro PT, Müssel C; Consortium for Logical Models and Tools, Kestler HA, Thieffry D, Xenarios I, Saez-Rodriguez J, Helikar T, Chaouiya C. Naldi A, et al. Among authors: thieffry d. Bioinformatics. 2015 Apr 1;31(7):1154-9. doi: 10.1093/bioinformatics/btv013. Epub 2015 Jan 25. Bioinformatics. 2015. PMID: 25619997
Logical modelling of Drosophila signalling pathways.
Mbodj A, Junion G, Brun C, Furlong EE, Thieffry D. Mbodj A, et al. Among authors: thieffry d. Mol Biosyst. 2013 Sep;9(9):2248-58. doi: 10.1039/c3mb70187e. Mol Biosyst. 2013. PMID: 23868318
Logical modelling of cell cycle control in eukaryotes: a comparative study.
Fauré A, Thieffry D. Fauré A, et al. Among authors: thieffry d. Mol Biosyst. 2009 Dec;5(12):1569-81. doi: 10.1039/B907562n. Epub 2009 Sep 17. Mol Biosyst. 2009. PMID: 19763341 Review.
Logical Modeling and Dynamical Analysis of Cellular Networks.
Abou-Jaoudé W, Traynard P, Monteiro PT, Saez-Rodriguez J, Helikar T, Thieffry D, Chaouiya C. Abou-Jaoudé W, et al. Among authors: thieffry d. Front Genet. 2016 May 31;7:94. doi: 10.3389/fgene.2016.00094. eCollection 2016. Front Genet. 2016. PMID: 27303434 Free PMC article. Review.
Model checking to assess T-helper cell plasticity.
Abou-Jaoudé W, Monteiro PT, Naldi A, Grandclaudon M, Soumelis V, Chaouiya C, Thieffry D. Abou-Jaoudé W, et al. Among authors: thieffry d. Front Bioeng Biotechnol. 2015 Jan 28;2:86. doi: 10.3389/fbioe.2014.00086. eCollection 2014. Front Bioeng Biotechnol. 2015. PMID: 25674559 Free PMC article.
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