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From specific gene regulation to genomic networks: a global analysis of transcriptional regulation in Escherichia coli.
Thieffry D, Huerta AM, PĂ©rez-Rueda E, Collado-Vides J. Thieffry D, et al. Bioessays. 1998 May;20(5):433-40. doi: 10.1002/(SICI)1521-1878(199805)20:5<433::AID-BIES10>3.0.CO;2-2. Bioessays. 1998. PMID: 9670816
Dynamical behaviour of biological regulatory networks--II. Immunity control in bacteriophage lambda.
Thieffry D, Thomas R. Thieffry D, et al. Bull Math Biol. 1995 Mar;57(2):277-97. doi: 10.1007/BF02460619. Bull Math Biol. 1995. PMID: 7703921
Syntactic recognition of regulatory regions in Escherichia coli.
Rosenblueth DA, Thieffry D, Huerta AM, Salgado H, Collado-Vides J. Rosenblueth DA, et al. Among authors: thieffry d. Comput Appl Biosci. 1996 Oct;12(5):415-22. doi: 10.1093/bioinformatics/12.5.415. Comput Appl Biosci. 1996. PMID: 8996790
Escherichia coli as a model system with which to study cell differentiation.
Thieffry D. Thieffry D. Hist Philos Life Sci. 1996;18(2):163-93. Hist Philos Life Sci. 1996. PMID: 9122371
Definite-clause grammars for the analysis of cis-regulatory regions in E. coli.
Thieffry D, Rosenblueth DA, Huerta AM, Salgado H, Collado-Vides J. Thieffry D, et al. Pac Symp Biocomput. 1997:441-52. Pac Symp Biocomput. 1997. PMID: 9390313
RegulonDB: a database on transcriptional regulation in Escherichia coli.
Huerta AM, Salgado H, Thieffry D, Collado-Vides J. Huerta AM, et al. Among authors: thieffry d. Nucleic Acids Res. 1998 Jan 1;26(1):55-9. doi: 10.1093/nar/26.1.55. Nucleic Acids Res. 1998. PMID: 9399800 Free PMC article.
Prediction of transcriptional regulatory sites in the complete genome sequence of Escherichia coli K-12.
Thieffry D, Salgado H, Huerta AM, Collado-Vides J. Thieffry D, et al. Bioinformatics. 1998 Jun;14(5):391-400. doi: 10.1093/bioinformatics/14.5.391. Bioinformatics. 1998. PMID: 9682052
Qualitative analysis of gene networks.
Thieffry D, Thomas R. Thieffry D, et al. Pac Symp Biocomput. 1998:77-88. Pac Symp Biocomput. 1998. PMID: 9697173
The modularity of biological regulatory networks.
Thieffry D, Romero D. Thieffry D, et al. Biosystems. 1999 Apr;50(1):49-59. doi: 10.1016/s0303-2647(98)00087-2. Biosystems. 1999. PMID: 10235650
Genetic control of flower morphogenesis in Arabidopsis thaliana: a logical analysis.
Mendoza L, Thieffry D, Alvarez-Buylla ER. Mendoza L, et al. Among authors: thieffry d. Bioinformatics. 1999 Jul-Aug;15(7-8):593-606. doi: 10.1093/bioinformatics/15.7.593. Bioinformatics. 1999. PMID: 10487867
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