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A draft map of the human proteome.
Kim MS, Pinto SM, Getnet D, Nirujogi RS, Manda SS, Chaerkady R, Madugundu AK, Kelkar DS, Isserlin R, Jain S, Thomas JK, Muthusamy B, Leal-Rojas P, Kumar P, Sahasrabuddhe NA, Balakrishnan L, Advani J, George B, Renuse S, Selvan LD, Patil AH, Nanjappa V, Radhakrishnan A, Prasad S, Subbannayya T, Raju R, Kumar M, Sreenivasamurthy SK, Marimuthu A, Sathe GJ, Chavan S, Datta KK, Subbannayya Y, Sahu A, Yelamanchi SD, Jayaram S, Rajagopalan P, Sharma J, Murthy KR, Syed N, Goel R, Khan AA, Ahmad S, Dey G, Mudgal K, Chatterjee A, Huang TC, Zhong J, Wu X, Shaw PG, Freed D, Zahari MS, Mukherjee KK, Shankar S, Mahadevan A, Lam H, Mitchell CJ, Shankar SK, Satishchandra P, Schroeder JT, Sirdeshmukh R, Maitra A, Leach SD, Drake CG, Halushka MK, Prasad TS, Hruban RH, Kerr CL, Bader GD, Iacobuzio-Donahue CA, Gowda H, Pandey A. Kim MS, et al. Nature. 2014 May 29;509(7502):575-81. doi: 10.1038/nature13302. Nature. 2014. PMID: 24870542 Free PMC article.
Long-Term Cigarette Smoke Exposure and Changes in MiRNA Expression and Proteome in Non-Small-Cell Lung Cancer.
Advani J, Subbannayya Y, Patel K, Khan AA, Patil AH, Jain AP, Solanki HS, Radhakrishnan A, Pinto SM, Sahasrabuddhe NA, Thomas JK, Mathur PP, Nair BG, Chang X, Prasad TSK, Sidransky D, Gowda H, Chatterjee A. Advani J, et al. Among authors: Thomas JK. OMICS. 2017 Jul;21(7):390-403. doi: 10.1089/omi.2017.0045. OMICS. 2017. PMID: 28692419 Free PMC article.
IL-11/IL11RA receptor mediated signaling: a web accessible knowledgebase.
Balakrishnan L, Soman S, Patil YB, Advani J, Thomas JK, Desai DV, Kulkarni-Kale U, Harsha HC, Prasad TS, Raju R, Pandey A, Dimitriadis E, Chatterjee A. Balakrishnan L, et al. Cell Commun Adhes. 2013 Aug;20(3-4):81-6. doi: 10.3109/15419061.2013.791683. Epub 2013 Apr 30. Cell Commun Adhes. 2013. PMID: 23631681
Access guide to human proteinpedia.
Muthusamy B, Thomas JK, Prasad TS, Pandey A. Muthusamy B, et al. Curr Protoc Bioinformatics. 2013 Mar;Chapter 1:Unit 1.21. doi: 10.1002/0471250953.bi0121s41. Curr Protoc Bioinformatics. 2013. PMID: 23504933 Free PMC article.
NetSlim: high-confidence curated signaling maps.
Raju R, Nanjappa V, Balakrishnan L, Radhakrishnan A, Thomas JK, Sharma J, Tian M, Palapetta SM, Subbannayya T, Sekhar NR, Muthusamy B, Goel R, Subbannayya Y, Telikicherla D, Bhattacharjee M, Pinto SM, Syed N, Srikanth MS, Sathe GJ, Ahmad S, Chavan SN, Kumar GS, Marimuthu A, Prasad TS, Harsha HC, Rahiman BA, Ohara O, Bader GD, Sujatha Mohan S, Schiemann WP, Pandey A. Raju R, et al. Database (Oxford). 2011 Sep 29;2011:bar032. doi: 10.1093/database/bar032. Print 2011. Database (Oxford). 2011. PMID: 21959865 Free PMC article.
A pathway map of prolactin signaling.
Radhakrishnan A, Raju R, Tuladhar N, Subbannayya T, Thomas JK, Goel R, Telikicherla D, Palapetta SM, Rahiman BA, Venkatesh DD, Urmila KK, Harsha HC, Mathur PP, Prasad TS, Pandey A, Shemanko C, Chatterjee A. Radhakrishnan A, et al. J Cell Commun Signal. 2012 Aug;6(3):169-73. doi: 10.1007/s12079-012-0168-0. Epub 2012 Jun 9. J Cell Commun Signal. 2012. PMID: 22684822 Free PMC article. No abstract available.
Pancreatic Cancer Database: an integrative resource for pancreatic cancer.
Thomas JK, Kim MS, Balakrishnan L, Nanjappa V, Raju R, Marimuthu A, Radhakrishnan A, Muthusamy B, Khan AA, Sakamuri S, Tankala SG, Singal M, Nair B, Sirdeshmukh R, Chatterjee A, Prasad TS, Maitra A, Gowda H, Hruban RH, Pandey A. Thomas JK, et al. Cancer Biol Ther. 2014 Aug;15(8):963-7. doi: 10.4161/cbt.29188. Epub 2014 May 19. Cancer Biol Ther. 2014. PMID: 24839966 Free PMC article.
A pathway map of glutamate metabolism.
Yelamanchi SD, Jayaram S, Thomas JK, Gundimeda S, Khan AA, Singhal A, Keshava Prasad TS, Pandey A, Somani BL, Gowda H. Yelamanchi SD, et al. J Cell Commun Signal. 2016 Mar;10(1):69-75. doi: 10.1007/s12079-015-0315-5. Epub 2015 Dec 3. J Cell Commun Signal. 2016. PMID: 26635200 Free PMC article.
Plasma Proteome Database as a resource for proteomics research: 2014 update.
Nanjappa V, Thomas JK, Marimuthu A, Muthusamy B, Radhakrishnan A, Sharma R, Ahmad Khan A, Balakrishnan L, Sahasrabuddhe NA, Kumar S, Jhaveri BN, Sheth KV, Kumar Khatana R, Shaw PG, Srikanth SM, Mathur PP, Shankar S, Nagaraja D, Christopher R, Mathivanan S, Raju R, Sirdeshmukh R, Chatterjee A, Simpson RJ, Harsha HC, Pandey A, Prasad TS. Nanjappa V, et al. Nucleic Acids Res. 2014 Jan;42(Database issue):D959-65. doi: 10.1093/nar/gkt1251. Epub 2013 Dec 3. Nucleic Acids Res. 2014. PMID: 24304897 Free PMC article.
Proteomic analysis of human osteoarthritis synovial fluid.
Balakrishnan L, Nirujogi RS, Ahmad S, Bhattacharjee M, Manda SS, Renuse S, Kelkar DS, Subbannayya Y, Raju R, Goel R, Thomas JK, Kaur N, Dhillon M, Tankala SG, Jois R, Vasdev V, Ramachandra Y, Sahasrabuddhe NA, Prasad TsK, Mohan S, Gowda H, Shankar S, Pandey A. Balakrishnan L, et al. Clin Proteomics. 2014 Feb 17;11(1):6. doi: 10.1186/1559-0275-11-6. Clin Proteomics. 2014. PMID: 24533825 Free PMC article.
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