Thomas-Chollier M - Search Results

1

RSAT: regulatory sequence analysis tools.

Thomas-Chollier M, Sand O, Turatsinze JV, Janky R, Defrance M, Vervisch E, Brohée S, van Helden J. Thomas-Chollier M, et al. Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W119-27. doi: 10.1093/nar/gkn304. Epub 2008 May 21. Nucleic Acids Res. 2008. PMID: 18495751 Free PMC article.

2

Using RSAT to scan genome sequences for transcription factor binding sites and cis-regulatory modules.

Turatsinze JV, Thomas-Chollier M, Defrance M, van Helden J. Turatsinze JV, et al. Nat Protoc. 2008;3(10):1578-88. doi: 10.1038/nprot.2008.97. Nat Protoc. 2008. PMID: 18802439

3

Analyzing multiple data sets by interconnecting RSAT programs via SOAP Web services: an example with ChIP-chip data.

Sand O, Thomas-Chollier M, Vervisch E, van Helden J. Sand O, et al. Nat Protoc. 2008;3(10):1604-15. doi: 10.1038/nprot.2008.99. Nat Protoc. 2008. PMID: 18802441

4

Retrieve-ensembl-seq: user-friendly and large-scale retrieval of single or multi-genome sequences from Ensembl.

Sand O, Thomas-Chollier M, van Helden J. Sand O, et al. Bioinformatics. 2009 Oct 15;25(20):2739-40. doi: 10.1093/bioinformatics/btp519. Epub 2009 Aug 31. Bioinformatics. 2009. PMID: 19720677

5

A non-tree-based comprehensive study of metazoan Hox and ParaHox genes prompts new insights into their origin and evolution.

Thomas-Chollier M, Ledent V, Leyns L, Vervoort M. Thomas-Chollier M, et al. BMC Evol Biol. 2010 Mar 11;10:73. doi: 10.1186/1471-2148-10-73. BMC Evol Biol. 2010. PMID: 20222951 Free PMC article.

6

RSAT 2011: regulatory sequence analysis tools.

Thomas-Chollier M, Defrance M, Medina-Rivera A, Sand O, Herrmann C, Thieffry D, van Helden J. Thomas-Chollier M, et al. Nucleic Acids Res. 2011 Jul;39(Web Server issue):W86-91. doi: 10.1093/nar/gkr377. Nucleic Acids Res. 2011. PMID: 21715389 Free PMC article.

7

RSAT peak-motifs: motif analysis in full-size ChIP-seq datasets.

Thomas-Chollier M, Herrmann C, Defrance M, Sand O, Thieffry D, van Helden J. Thomas-Chollier M, et al. Nucleic Acids Res. 2012 Feb;40(4):e31. doi: 10.1093/nar/gkr1104. Epub 2011 Dec 8. Nucleic Acids Res. 2012. PMID: 22156162 Free PMC article.

8

RSAT 2015: Regulatory Sequence Analysis Tools.

Medina-Rivera A, Defrance M, Sand O, Herrmann C, Castro-Mondragon JA, Delerce J, Jaeger S, Blanchet C, Vincens P, Caron C, Staines DM, Contreras-Moreira B, Artufel M, Charbonnier-Khamvongsa L, Hernandez C, Thieffry D, Thomas-Chollier M, van Helden J. Medina-Rivera A, et al. Nucleic Acids Res. 2015 Jul 1;43(W1):W50-6. doi: 10.1093/nar/gkv362. Epub 2015 Apr 22. Nucleic Acids Res. 2015. PMID: 25904632 Free PMC article.

9

RSAT 2018: regulatory sequence analysis tools 20th anniversary.

Nguyen NTT, Contreras-Moreira B, Castro-Mondragon JA, Santana-Garcia W, Ossio R, Robles-Espinoza CD, Bahin M, Collombet S, Vincens P, Thieffry D, van Helden J, Medina-Rivera A, Thomas-Chollier M. Nguyen NTT, et al. Nucleic Acids Res. 2018 Jul 2;46(W1):W209-W214. doi: 10.1093/nar/gky317. Nucleic Acids Res. 2018. PMID: 29722874 Free PMC article.

10

RSAT variation-tools: An accessible and flexible framework to predict the impact of regulatory variants on transcription factor binding.

Santana-Garcia W, Rocha-Acevedo M, Ramirez-Navarro L, Mbouamboua Y, Thieffry D, Thomas-Chollier M, Contreras-Moreira B, van Helden J, Medina-Rivera A. Santana-Garcia W, et al. Among authors: thomas chollier m. Comput Struct Biotechnol J. 2019 Nov 7;17:1415-1428. doi: 10.1016/j.csbj.2019.09.009. eCollection 2019. Comput Struct Biotechnol J. 2019. PMID: 31871587 Free PMC article.

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