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CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice.
Thompson JD, Higgins DG, Gibson TJ. Thompson JD, et al. Nucleic Acids Res. 1994 Nov 11;22(22):4673-80. doi: 10.1093/nar/22.22.4673. Nucleic Acids Res. 1994. PMID: 7984417 Free PMC article.
Clustal W and Clustal X version 2.0.
Larkin MA, Blackshields G, Brown NP, Chenna R, McGettigan PA, McWilliam H, Valentin F, Wallace IM, Wilm A, Lopez R, Thompson JD, Gibson TJ, Higgins DG. Larkin MA, et al. Bioinformatics. 2007 Nov 1;23(21):2947-8. doi: 10.1093/bioinformatics/btm404. Epub 2007 Sep 10. Bioinformatics. 2007. PMID: 17846036
Using CLUSTAL for multiple sequence alignments.
Higgins DG, Thompson JD, Gibson TJ. Higgins DG, et al. Methods Enzymol. 1996;266:383-402. doi: 10.1016/s0076-6879(96)66024-8. Methods Enzymol. 1996. PMID: 8743695
Evidence for a protein domain superfamily shared by the cyclins, TFIIB and RB/p107.
Gibson TJ, Thompson JD, Blocker A, Kouzarides T. Gibson TJ, et al. Nucleic Acids Res. 1994 Mar 25;22(6):946-52. doi: 10.1093/nar/22.6.946. Nucleic Acids Res. 1994. PMID: 8152925 Free PMC article.
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