Thompson JD - Search Results

1

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice.

Thompson JD, Higgins DG, Gibson TJ. Thompson JD, et al. Nucleic Acids Res. 1994 Nov 11;22(22):4673-80. doi: 10.1093/nar/22.22.4673. Nucleic Acids Res. 1994. PMID: 7984417 Free PMC article.

2

Clustal W and Clustal X version 2.0.

Larkin MA, Blackshields G, Brown NP, Chenna R, McGettigan PA, McWilliam H, Valentin F, Wallace IM, Wilm A, Lopez R, Thompson JD, Gibson TJ, Higgins DG. Larkin MA, et al. Bioinformatics. 2007 Nov 1;23(21):2947-8. doi: 10.1093/bioinformatics/btm404. Epub 2007 Sep 10. Bioinformatics. 2007. PMID: 17846036

3

PairWise and SearchWise: finding the optimal alignment in a simultaneous comparison of a protein profile against all DNA translation frames.

Birney E, Thompson JD, Gibson TJ. Birney E, et al. Nucleic Acids Res. 1996 Jul 15;24(14):2730-9. doi: 10.1093/nar/24.14.2730. Nucleic Acids Res. 1996. PMID: 8759004 Free PMC article.

4

Using CLUSTAL for multiple sequence alignments.

Higgins DG, Thompson JD, Gibson TJ. Higgins DG, et al. Methods Enzymol. 1996;266:383-402. doi: 10.1016/s0076-6879(96)66024-8. Methods Enzymol. 1996. PMID: 8743695

5

Proposed structure for the DNA-binding domain of the helix-loop-helix family of eukaryotic gene regulatory proteins.

Gibson TJ, Thompson JD, Abagyan RA. Gibson TJ, et al. Protein Eng. 1993 Jan;6(1):41-50. doi: 10.1093/protein/6.1.41. Protein Eng. 1993. PMID: 8433970

6

The KH domain occurs in a diverse set of RNA-binding proteins that include the antiterminator NusA and is probably involved in binding to nucleic acid.

Gibson TJ, Thompson JD, Heringa J. Gibson TJ, et al. FEBS Lett. 1993 Jun 21;324(3):361-6. doi: 10.1016/0014-5793(93)80152-k. FEBS Lett. 1993. PMID: 8405383

7

Improved sensitivity of profile searches through the use of sequence weights and gap excision.

Thompson JD, Higgins DG, Gibson TJ. Thompson JD, et al. Comput Appl Biosci. 1994 Feb;10(1):19-29. doi: 10.1093/bioinformatics/10.1.19. Comput Appl Biosci. 1994. PMID: 8193951

8

Evidence for a protein domain superfamily shared by the cyclins, TFIIB and RB/p107.

Gibson TJ, Thompson JD, Blocker A, Kouzarides T. Gibson TJ, et al. Nucleic Acids Res. 1994 Mar 25;22(6):946-52. doi: 10.1093/nar/22.6.946. Nucleic Acids Res. 1994. PMID: 8152925 Free PMC article.

9

Detection of dsRNA-binding domains in RNA helicase A and Drosophila maleless: implications for monomeric RNA helicases.

Gibson TJ, Thompson JD. Gibson TJ, et al. Nucleic Acids Res. 1994 Jul 11;22(13):2552-6. doi: 10.1093/nar/22.13.2552. Nucleic Acids Res. 1994. PMID: 8041617 Free PMC article.

10

KH domains within the FMR1 sequence suggest that fragile X syndrome stems from a defect in RNA metabolism.

Gibson TJ, Rice PM, Thompson JD, Heringa J. Gibson TJ, et al. Trends Biochem Sci. 1993 Sep;18(9):331-3. doi: 10.1016/0968-0004(93)90068-x. Trends Biochem Sci. 1993. PMID: 7694397 No abstract available.

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