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83 results
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Constrained geometric simulation of diffusive motion in proteins.
Wells S, Menor S, Hespenheide B, Thorpe MF. Wells S, et al. Among authors: thorpe mf. Phys Biol. 2005 Nov 9;2(4):S127-36. doi: 10.1088/1478-3975/2/4/S07. Phys Biol. 2005. PMID: 16280618
Path Similarity Analysis: A Method for Quantifying Macromolecular Pathways.
Seyler SL, Kumar A, Thorpe MF, Beckstein O. Seyler SL, et al. Among authors: thorpe mf. PLoS Comput Biol. 2015 Oct 21;11(10):e1004568. doi: 10.1371/journal.pcbi.1004568. eCollection 2015 Oct. PLoS Comput Biol. 2015. PMID: 26488417 Free PMC article.
Partial unfolding and refolding for structure refinement: A unified approach of geometric simulations and molecular dynamics.
Kumar A, Campitelli P, Thorpe MF, Ozkan SB. Kumar A, et al. Among authors: thorpe mf. Proteins. 2015 Dec;83(12):2279-92. doi: 10.1002/prot.24947. Epub 2015 Nov 17. Proteins. 2015. PMID: 26476100 Free PMC article.
Collective dynamics differentiates functional divergence in protein evolution.
Glembo TJ, Farrell DW, Gerek ZN, Thorpe MF, Ozkan SB. Glembo TJ, et al. Among authors: thorpe mf. PLoS Comput Biol. 2012;8(3):e1002428. doi: 10.1371/journal.pcbi.1002428. Epub 2012 Mar 29. PLoS Comput Biol. 2012. PMID: 22479170 Free PMC article.
Flexibility of ideal zeolite frameworks.
Kapko V, Dawson C, Treacy MM, Thorpe MF. Kapko V, et al. Among authors: thorpe mf. Phys Chem Chem Phys. 2010 Aug 14;12(30):8531-41. doi: 10.1039/c003977b. Epub 2010 Jun 29. Phys Chem Chem Phys. 2010. PMID: 20589266
Hierarchical plasticity from pair distance fluctuations.
Menor SA, de Graff AM, Thorpe MF. Menor SA, et al. Among authors: thorpe mf. Phys Biol. 2009 Jul 14;6(3):036017. doi: 10.1088/1478-3975/6/3/036017. Phys Biol. 2009. PMID: 19597264
Protein flexibility using constraints from molecular dynamics simulations.
Mamonova T, Hespenheide B, Straub R, Thorpe MF, Kurnikova M. Mamonova T, et al. Among authors: thorpe mf. Phys Biol. 2005 Nov 9;2(4):S137-47. doi: 10.1088/1478-3975/2/4/S08. Phys Biol. 2005. PMID: 16280619
Comment on elastic network models and proteins.
Thorpe MF. Thorpe MF. Phys Biol. 2007 Apr 3;4(1):60-3; discussion 64-5. doi: 10.1088/1478-3975/4/1/N01. Phys Biol. 2007. PMID: 17406086
Fitting low-resolution cryo-EM maps of proteins using constrained geometric simulations.
Jolley CC, Wells SA, Fromme P, Thorpe MF. Jolley CC, et al. Among authors: thorpe mf. Biophys J. 2008 Mar 1;94(5):1613-21. doi: 10.1529/biophysj.107.115949. Epub 2007 Nov 9. Biophys J. 2008. PMID: 17993504 Free PMC article.
Protein unfolding under force: crack propagation in a network.
de Graff AM, Shannon G, Farrell DW, Williams PM, Thorpe MF. de Graff AM, et al. Among authors: thorpe mf. Biophys J. 2011 Aug 3;101(3):736-44. doi: 10.1016/j.bpj.2011.05.072. Biophys J. 2011. PMID: 21806942 Free PMC article.
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