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Fiji: an open-source platform for biological-image analysis.
Schindelin J, Arganda-Carreras I, Frise E, Kaynig V, Longair M, Pietzsch T, Preibisch S, Rueden C, Saalfeld S, Schmid B, Tinevez JY, White DJ, Hartenstein V, Eliceiri K, Tomancak P, Cardona A. Schindelin J, et al. Nat Methods. 2012 Jun 28;9(7):676-82. doi: 10.1038/nmeth.2019. Nat Methods. 2012. PMID: 22743772 Free PMC article.
TrackMate: An open and extensible platform for single-particle tracking.
Tinevez JY, Perry N, Schindelin J, Hoopes GM, Reynolds GD, Laplantine E, Bednarek SY, Shorte SL, Eliceiri KW. Tinevez JY, et al. Methods. 2017 Feb 15;115:80-90. doi: 10.1016/j.ymeth.2016.09.016. Epub 2016 Oct 3. Methods. 2017. PMID: 27713081
Multi-view light-sheet imaging and tracking with the MaMuT software reveals the cell lineage of a direct developing arthropod limb.
Wolff C, Tinevez JY, Pietzsch T, Stamataki E, Harich B, Guignard L, Preibisch S, Shorte S, Keller PJ, Tomancak P, Pavlopoulos A. Wolff C, et al. Among authors: tinevez jy. Elife. 2018 Mar 29;7:e34410. doi: 10.7554/eLife.34410. Elife. 2018. PMID: 29595475 Free PMC article.
Objective comparison of particle tracking methods.
Chenouard N, Smal I, de Chaumont F, Maška M, Sbalzarini IF, Gong Y, Cardinale J, Carthel C, Coraluppi S, Winter M, Cohen AR, Godinez WJ, Rohr K, Kalaidzidis Y, Liang L, Duncan J, Shen H, Xu Y, Magnusson KE, Jaldén J, Blau HM, Paul-Gilloteaux P, Roudot P, Kervrann C, Waharte F, Tinevez JY, Shorte SL, Willemse J, Celler K, van Wezel GP, Dan HW, Tsai YS, Ortiz de Solórzano C, Olivo-Marin JC, Meijering E. Chenouard N, et al. Nat Methods. 2014 Mar;11(3):281-9. doi: 10.1038/nmeth.2808. Epub 2014 Jan 19. Nat Methods. 2014. PMID: 24441936 Free PMC article.
Object Segmentation and Ground Truth in 3D Embryonic Imaging.
Rajasekaran B, Uriu K, Valentin G, Tinevez JY, Oates AC. Rajasekaran B, et al. PLoS One. 2016 Jun 22;11(6):e0150853. doi: 10.1371/journal.pone.0150853. eCollection 2016. PLoS One. 2016. PMID: 27332860 Free PMC article.
Polar actomyosin contractility destabilizes the position of the cytokinetic furrow.
Sedzinski J, Biro M, Oswald A, Tinevez JY, Salbreux G, Paluch E. Sedzinski J, et al. Nature. 2011 Aug 7;476(7361):462-6. doi: 10.1038/nature10286. Nature. 2011. PMID: 21822289
Role of cortical tension in bleb growth.
Tinevez JY, Schulze U, Salbreux G, Roensch J, Joanny JF, Paluch E. Tinevez JY, et al. Proc Natl Acad Sci U S A. 2009 Nov 3;106(44):18581-6. doi: 10.1073/pnas.0903353106. Epub 2009 Oct 21. Proc Natl Acad Sci U S A. 2009. PMID: 19846787 Free PMC article.
TNF and IL-1 exhibit distinct ubiquitin requirements for inducing NEMO-IKK supramolecular structures.
Tarantino N, Tinevez JY, Crowell EF, Boisson B, Henriques R, Mhlanga M, Agou F, Israël A, Laplantine E. Tarantino N, et al. J Cell Biol. 2014 Jan 20;204(2):231-45. doi: 10.1083/jcb.201307172. J Cell Biol. 2014. PMID: 24446482 Free PMC article.
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