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Targeted gene inactivation in Clostridium phytofermentans shows that cellulose degradation requires the family 9 hydrolase Cphy3367.
Tolonen AC, Chilaka AC, Church GM. Tolonen AC, et al. Mol Microbiol. 2009 Dec;74(6):1300-13. doi: 10.1111/j.1365-2958.2009.06890.x. Epub 2009 Sep 22. Mol Microbiol. 2009. PMID: 19775243 Free PMC article.
Global gene expression of Prochlorococcus ecotypes in response to changes in nitrogen availability.
Tolonen AC, Aach J, Lindell D, Johnson ZI, Rector T, Steen R, Church GM, Chisholm SW. Tolonen AC, et al. Mol Syst Biol. 2006;2:53. doi: 10.1038/msb4100087. Epub 2006 Oct 3. Mol Syst Biol. 2006. PMID: 17016519 Free PMC article.
Genetic manipulation of Prochlorococcus strain MIT9313: green fluorescent protein expression from an RSF1010 plasmid and Tn5 transposition.
Tolonen AC, Liszt GB, Hess WR. Tolonen AC, et al. Appl Environ Microbiol. 2006 Dec;72(12):7607-13. doi: 10.1128/AEM.02034-06. Epub 2006 Oct 13. Appl Environ Microbiol. 2006. PMID: 17041154 Free PMC article.
Proteome-wide systems analysis of a cellulosic biofuel-producing microbe.
Tolonen AC, Haas W, Chilaka AC, Aach J, Gygi SP, Church GM. Tolonen AC, et al. Mol Syst Biol. 2011 Jan 18;7:461. doi: 10.1038/msb.2010.116. Mol Syst Biol. 2011. PMID: 21245846 Free PMC article.
Precise manipulation of chromosomes in vivo enables genome-wide codon replacement.
Isaacs FJ, Carr PA, Wang HH, Lajoie MJ, Sterling B, Kraal L, Tolonen AC, Gianoulis TA, Goodman DB, Reppas NB, Emig CJ, Bang D, Hwang SJ, Jewett MC, Jacobson JM, Church GM. Isaacs FJ, et al. Among authors: tolonen ac. Science. 2011 Jul 15;333(6040):348-53. doi: 10.1126/science.1205822. Science. 2011. PMID: 21764749 Free PMC article.
Fungal lysis by a soil bacterium fermenting cellulose.
Tolonen AC, Cerisy T, El-Sayyed H, Boutard M, Salanoubat M, Church GM. Tolonen AC, et al. Environ Microbiol. 2015 Aug;17(8):2618-27. doi: 10.1111/1462-2920.12495. Epub 2014 May 25. Environ Microbiol. 2015. PMID: 24798076
Genome and Transcriptome of Clostridium phytofermentans, Catalyst for the Direct Conversion of Plant Feedstocks to Fuels.
Petit E, Coppi MV, Hayes JC, Tolonen AC, Warnick T, Latouf WG, Amisano D, Biddle A, Mukherjee S, Ivanova N, Lykidis A, Land M, Hauser L, Kyrpides N, Henrissat B, Lau J, Schnell DJ, Church GM, Leschine SB, Blanchard JL. Petit E, et al. Among authors: tolonen ac. PLoS One. 2015 Jun 2;10(6):e0118285. doi: 10.1371/journal.pone.0118285. eCollection 2015. PLoS One. 2015. PMID: 26035711 Free PMC article.
Physiology, Genomics, and Pathway Engineering of an Ethanol-Tolerant Strain of Clostridium phytofermentans.
Tolonen AC, Zuroff TR, Ramya M, Boutard M, Cerisy T, Curtis WR. Tolonen AC, et al. Appl Environ Microbiol. 2015 Aug 15;81(16):5440-8. doi: 10.1128/AEM.00619-15. Epub 2015 Jun 5. Appl Environ Microbiol. 2015. PMID: 26048945 Free PMC article.
Dissecting the human microbiome with single-cell genomics.
Tolonen AC, Xavier RJ. Tolonen AC, et al. Genome Med. 2017 Jun 14;9(1):56. doi: 10.1186/s13073-017-0448-7. Genome Med. 2017. PMID: 28615076 Free PMC article. Review.
Evolution of a Biomass-Fermenting Bacterium To Resist Lignin Phenolics.
Cerisy T, Souterre T, Torres-Romero I, Boutard M, Dubois I, Patrouix J, Labadie K, Berrabah W, Salanoubat M, Doring V, Tolonen AC. Cerisy T, et al. Among authors: tolonen ac. Appl Environ Microbiol. 2017 May 17;83(11):e00289-17. doi: 10.1128/AEM.00289-17. Print 2017 Jun 1. Appl Environ Microbiol. 2017. PMID: 28363966 Free PMC article.
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