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Globally optimal stitching of tiled 3D microscopic image acquisitions.
Preibisch S, Saalfeld S, Tomancak P. Preibisch S, et al. Among authors: tomancak p. Bioinformatics. 2009 Jun 1;25(11):1463-5. doi: 10.1093/bioinformatics/btp184. Epub 2009 Apr 3. Bioinformatics. 2009. PMID: 19346324 Free PMC article.
CATMAID: collaborative annotation toolkit for massive amounts of image data.
Saalfeld S, Cardona A, Hartenstein V, Tomancak P. Saalfeld S, et al. Among authors: tomancak p. Bioinformatics. 2009 Aug 1;25(15):1984-6. doi: 10.1093/bioinformatics/btp266. Epub 2009 Apr 17. Bioinformatics. 2009. PMID: 19376822 Free PMC article.
A toolkit for high-throughput, cross-species gene engineering in Drosophila.
Ejsmont RK, Sarov M, Winkler S, Lipinski KA, Tomancak P. Ejsmont RK, et al. Among authors: tomancak p. Nat Methods. 2009 Jun;6(6):435-7. doi: 10.1038/nmeth.1334. Nat Methods. 2009. PMID: 19465918
Drosophila brain development: closing the gap between a macroarchitectural and microarchitectural approach.
Cardona A, Saalfeld S, Tomancak P, Hartenstein V. Cardona A, et al. Among authors: tomancak p. Cold Spring Harb Symp Quant Biol. 2009;74:235-48. doi: 10.1101/sqb.2009.74.037. Epub 2009 Dec 22. Cold Spring Harb Symp Quant Biol. 2009. PMID: 20028843 Free PMC article.
Visualization of image data from cells to organisms.
Walter T, Shattuck DW, Baldock R, Bastin ME, Carpenter AE, Duce S, Ellenberg J, Fraser A, Hamilton N, Pieper S, Ragan MA, Schneider JE, Tomancak P, Hériché JK. Walter T, et al. Among authors: tomancak p. Nat Methods. 2010 Mar;7(3 Suppl):S26-41. doi: 10.1038/nmeth.1431. Nat Methods. 2010. PMID: 20195255 Free PMC article. Review.
Mapping the complexity of transcription control in higher eukaryotes.
Tomancak P, Ohler U. Tomancak P, et al. Genome Biol. 2010;11(4):115. doi: 10.1186/gb-2010-11-4-115. Epub 2010 Apr 30. Genome Biol. 2010. PMID: 20441601 Free PMC article.
As-rigid-as-possible mosaicking and serial section registration of large ssTEM datasets.
Saalfeld S, Cardona A, Hartenstein V, Tomančák P. Saalfeld S, et al. Among authors: tomancak p. Bioinformatics. 2010 Jun 15;26(12):i57-63. doi: 10.1093/bioinformatics/btq219. Bioinformatics. 2010. PMID: 20529937 Free PMC article.
An alignment-free method to identify candidate orthologous enhancers in multiple Drosophila genomes.
Arunachalam M, Jayasurya K, Tomancak P, Ohler U. Arunachalam M, et al. Among authors: tomancak p. Bioinformatics. 2010 Sep 1;26(17):2109-15. doi: 10.1093/bioinformatics/btq358. Epub 2010 Jul 11. Bioinformatics. 2010. PMID: 20624780 Free PMC article.
linkcomm: an R package for the generation, visualization, and analysis of link communities in networks of arbitrary size and type.
Kalinka AT, Tomancak P. Kalinka AT, et al. Among authors: tomancak p. Bioinformatics. 2011 Jul 15;27(14):2011-2. doi: 10.1093/bioinformatics/btr311. Epub 2011 May 19. Bioinformatics. 2011. PMID: 21596792 Free PMC article.
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