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A toolkit for high-throughput, cross-species gene engineering in Drosophila.
Ejsmont RK, Sarov M, Winkler S, Lipinski KA, Tomancak P. Ejsmont RK, et al. Among authors: tomancak p. Nat Methods. 2009 Jun;6(6):435-7. doi: 10.1038/nmeth.1334. Nat Methods. 2009. PMID: 19465918
Iron-regulatory protein-1 (IRP-1) is highly conserved in two invertebrate species--characterization of IRP-1 homologues in Drosophila melanogaster and Caenorhabditis elegans.
Muckenthaler M, Gunkel N, Frishman D, Cyrklaff A, Tomancak P, Hentze MW. Muckenthaler M, et al. Among authors: tomancak p. Eur J Biochem. 1998 Jun 1;254(2):230-7. doi: 10.1046/j.1432-1327.1998.2540230.x. Eur J Biochem. 1998. PMID: 9660175
A Drosophila melanogaster homologue of Caenorhabditis elegans par-1 acts at an early step in embryonic-axis formation.
Tomancak P, Piano F, Riechmann V, Gunsalus KC, Kemphues KJ, Ephrussi A. Tomancak P, et al. Nat Cell Biol. 2000 Jul;2(7):458-60. doi: 10.1038/35017101. Nat Cell Biol. 2000. PMID: 10878812 No abstract available.
Exploiting transcription factor binding site clustering to identify cis-regulatory modules involved in pattern formation in the Drosophila genome.
Berman BP, Nibu Y, Pfeiffer BD, Tomancak P, Celniker SE, Levine M, Rubin GM, Eisen MB. Berman BP, et al. Among authors: tomancak p. Proc Natl Acad Sci U S A. 2002 Jan 22;99(2):757-62. doi: 10.1073/pnas.231608898. Proc Natl Acad Sci U S A. 2002. PMID: 11805330 Free PMC article.
Systematic determination of patterns of gene expression during Drosophila embryogenesis.
Tomancak P, Beaton A, Weiszmann R, Kwan E, Shu S, Lewis SE, Richards S, Ashburner M, Hartenstein V, Celniker SE, Rubin GM. Tomancak P, et al. Genome Biol. 2002;3(12):RESEARCH0088. doi: 10.1186/gb-2002-3-12-research0088. Epub 2002 Dec 23. Genome Biol. 2002. PMID: 12537577 Free PMC article.
Computational identification of Drosophila microRNA genes.
Lai EC, Tomancak P, Williams RW, Rubin GM. Lai EC, et al. Among authors: tomancak p. Genome Biol. 2003;4(7):R42. doi: 10.1186/gb-2003-4-7-r42. Epub 2003 Jun 30. Genome Biol. 2003. PMID: 12844358 Free PMC article.
Drosophila microRNAs exhibit diverse spatial expression patterns during embryonic development.
Aboobaker AA, Tomancak P, Patel N, Rubin GM, Lai EC. Aboobaker AA, et al. Among authors: tomancak p. Proc Natl Acad Sci U S A. 2005 Dec 13;102(50):18017-22. doi: 10.1073/pnas.0508823102. Epub 2005 Dec 5. Proc Natl Acad Sci U S A. 2005. PMID: 16330759 Free PMC article.
Global analysis of patterns of gene expression during Drosophila embryogenesis.
Tomancak P, Berman BP, Beaton A, Weiszmann R, Kwan E, Hartenstein V, Celniker SE, Rubin GM. Tomancak P, et al. Genome Biol. 2007;8(7):R145. doi: 10.1186/gb-2007-8-7-r145. Genome Biol. 2007. PMID: 17645804 Free PMC article.
Globally optimal stitching of tiled 3D microscopic image acquisitions.
Preibisch S, Saalfeld S, Tomancak P. Preibisch S, et al. Among authors: tomancak p. Bioinformatics. 2009 Jun 1;25(11):1463-5. doi: 10.1093/bioinformatics/btp184. Epub 2009 Apr 3. Bioinformatics. 2009. PMID: 19346324 Free PMC article.
CATMAID: collaborative annotation toolkit for massive amounts of image data.
Saalfeld S, Cardona A, Hartenstein V, Tomancak P. Saalfeld S, et al. Among authors: tomancak p. Bioinformatics. 2009 Aug 1;25(15):1984-6. doi: 10.1093/bioinformatics/btp266. Epub 2009 Apr 17. Bioinformatics. 2009. PMID: 19376822 Free PMC article.
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