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2,295 results
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In silico screening of archaeal tRNA-encoding genes having multiple introns with bulge-helix-bulge splicing motifs.
Sugahara J, Yachie N, Arakawa K, Tomita M. Sugahara J, et al. Among authors: tomita m. RNA. 2007 May;13(5):671-81. doi: 10.1261/rna.309507. Epub 2007 Mar 16. RNA. 2007. PMID: 17369313 Free PMC article.
Introns and reading frames: correlation between splicing sites and their codon positions.
Tomita M, Shimizu N, Brutlag DL. Tomita M, et al. Mol Biol Evol. 1996 Nov;13(9):1219-23. doi: 10.1093/oxfordjournals.molbev.a025687. Mol Biol Evol. 1996. PMID: 8896374
Comparative study of overlapping genes in the genomes of Mycoplasma genitalium and Mycoplasma pneumoniae.
Fukuda Y, Washio T, Tomita M. Fukuda Y, et al. Among authors: tomita m. Nucleic Acids Res. 1999 Apr 15;27(8):1847-53. doi: 10.1093/nar/27.8.1847. Nucleic Acids Res. 1999. PMID: 10101192 Free PMC article.
Sequence patterns observed in 5' flanking regions of primate Alu elements.
Toda Y, Saito R, Tomita M. Toda Y, et al. Among authors: tomita m. Ann N Y Acad Sci. 1999 May 18;870:369-74. doi: 10.1111/j.1749-6632.1999.tb08905.x. Ann N Y Acad Sci. 1999. PMID: 10415500
Computer analyses of complete genomes suggest that some archaebacteria employ both eukaryotic and eubacterial mechanisms in translation initiation.
Saito R, Tomita M. Saito R, et al. Among authors: tomita m. Gene. 1999 Sep 30;238(1):79-83. doi: 10.1016/s0378-1119(99)00254-1. Gene. 1999. PMID: 10570986
In eubacterial genomes, on the other hand, ribosome binds to the Shine-Dalgarno (SD) sequence at once without mRNA scanning, and the characteristic patterns of ATG triplet depletion were not observed (Saito, R., Tomita, M., 1999. On negative selection against ATG tr …
In eubacterial genomes, on the other hand, ribosome binds to the Shine-Dalgarno (SD) sequence at once without mRNA scanning, and the charact …
Correlation between Shine--Dalgarno sequence conservation and codon usage of bacterial genes.
Sakai H, Imamura C, Osada Y, Saito R, Washio T, Tomita M. Sakai H, et al. Among authors: tomita m. J Mol Evol. 2001 Feb;52(2):164-70. doi: 10.1007/s002390010145. J Mol Evol. 2001. PMID: 11231896
Preferential usage of some minor codons in bacteria.
Ohno H, Sakai H, Washio T, Tomita M. Ohno H, et al. Among authors: tomita m. Gene. 2001 Oct 3;276(1-2):107-15. doi: 10.1016/s0378-1119(01)00670-9. Gene. 2001. PMID: 11591477
Inferring alternative splicing patterns in mouse from a full-length cDNA library and microarray data.
Kochiwa H, Suzuki R, Washio T, Saito R, Bono H, Carninci P, Okazaki Y, Miki R, Hayashizaki Y, Tomita M; RIKEN Genome Exploration Research Group Phase II Team. Kochiwa H, et al. Among authors: tomita m. Genome Res. 2002 Aug;12(8):1286-93. doi: 10.1101/gr.220302. Genome Res. 2002. PMID: 12176936 Free PMC article.
Comprehensive sequence analysis of translation termination sites in various eukaryotes.
Ozawa Y, Hanaoka S, Saito R, Washio T, Nakano S, Shinagawa A, Itoh M, Shibata K, Carninci P, Konno H, Kawai J, Hayashizaki Y, Tomita M. Ozawa Y, et al. Among authors: tomita m. Gene. 2002 Oct 30;300(1-2):79-87. doi: 10.1016/s0378-1119(02)01042-9. Gene. 2002. PMID: 12468089
On biased distribution of introns in various eukaryotes.
Sakurai A, Fujimori S, Kochiwa H, Kitamura-Abe S, Washio T, Saito R, Carninci P, Hayashizaki Y, Tomita M. Sakurai A, et al. Among authors: tomita m. Gene. 2002 Oct 30;300(1-2):89-95. doi: 10.1016/s0378-1119(02)01035-1. Gene. 2002. PMID: 12468090
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