Tompa M - Search Results

1

A linear time algorithm for finding all maximal scoring subsequences.

Ruzzo WL, Tompa M. Ruzzo WL, et al. Among authors: tompa m. Proc Int Conf Intell Syst Mol Biol. 1999:234-41. Proc Int Conf Intell Syst Mol Biol. 1999. PMID: 10786306

2

MicroFootPrinter: a tool for phylogenetic footprinting in prokaryotic genomes.

Neph S, Tompa M. Neph S, et al. Among authors: tompa m. Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W366-8. doi: 10.1093/nar/gkl069. Nucleic Acids Res. 2006. PMID: 16845027 Free PMC article.

3

Measuring the accuracy of genome-size multiple alignments.

Prakash A, Tompa M. Prakash A, et al. Among authors: tompa m. Genome Biol. 2007;8(6):R124. doi: 10.1186/gb-2007-8-6-r124. Genome Biol. 2007. PMID: 17594489 Free PMC article.

4

Construction of optimal quality control for oligo arrays.

Colbourn CJ, Ling AC, Tompa M. Colbourn CJ, et al. Among authors: tompa m. Bioinformatics. 2002 Apr;18(4):529-35. doi: 10.1093/bioinformatics/18.4.529. Bioinformatics. 2002. PMID: 12016050

5

Discovery of novel transcription factor binding sites by statistical overrepresentation.

Sinha S, Tompa M. Sinha S, et al. Among authors: tompa m. Nucleic Acids Res. 2002 Dec 15;30(24):5549-60. doi: 10.1093/nar/gkf669. Nucleic Acids Res. 2002. PMID: 12490723 Free PMC article.

6

How accurately is ncRNA aligned within whole-genome multiple alignments?

Wang AX, Ruzzo WL, Tompa M. Wang AX, et al. Among authors: tompa m. BMC Bioinformatics. 2007 Oct 26;8:417. doi: 10.1186/1471-2105-8-417. BMC Bioinformatics. 2007. PMID: 17963514 Free PMC article.

7

PhyME: a probabilistic algorithm for finding motifs in sets of orthologous sequences.

Sinha S, Blanchette M, Tompa M. Sinha S, et al. Among authors: tompa m. BMC Bioinformatics. 2004 Oct 28;5:170. doi: 10.1186/1471-2105-5-170. BMC Bioinformatics. 2004. PMID: 15511292 Free PMC article.

8

Statistics of local multiple alignments.

Prakash A, Tompa M. Prakash A, et al. Among authors: tompa m. Bioinformatics. 2005 Jun;21 Suppl 1:i344-50. doi: 10.1093/bioinformatics/bti1042. Bioinformatics. 2005. PMID: 15961477

9

Algorithms for locating extremely conserved elements in multiple sequence alignments.

Tseng HH, Tompa M. Tseng HH, et al. Among authors: tompa m. BMC Bioinformatics. 2009 Dec 18;10:432. doi: 10.1186/1471-2105-10-432. BMC Bioinformatics. 2009. PMID: 20021665 Free PMC article.

10

Mis-translation of a computationally designed protein yields an exceptionally stable homodimer: implications for protein engineering and evolution.

Dantas G, Watters AL, Lunde BM, Eletr ZM, Isern NG, Roseman T, Lipfert J, Doniach S, Tompa M, Kuhlman B, Stoddard BL, Varani G, Baker D. Dantas G, et al. Among authors: tompa m. J Mol Biol. 2006 Oct 6;362(5):1004-24. doi: 10.1016/j.jmb.2006.07.092. Epub 2006 Aug 4. J Mol Biol. 2006. PMID: 16949611

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