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Enhancing acronym/abbreviation knowledge bases with semantic information.
Torii M, Liu H. Torii M, et al. AMIA Annu Symp Proc. 2007 Oct 11;2007:731-5. AMIA Annu Symp Proc. 2007. PMID: 18693933 Free PMC article.
Quantitative assessment of dictionary-based protein named entity tagging.
Liu H, Hu ZZ, Torii M, Wu C, Friedman C. Liu H, et al. J Am Med Inform Assoc. 2006 Sep-Oct;13(5):497-507. doi: 10.1197/jamia.M2085. Epub 2006 Jun 23. J Am Med Inform Assoc. 2006. PMID: 16799122 Free PMC article.
BioTagger-GM: a gene/protein name recognition system.
Torii M, Hu Z, Wu CH, Liu H. Torii M, et al. J Am Med Inform Assoc. 2009 Mar-Apr;16(2):247-55. doi: 10.1197/jamia.M2844. Epub 2008 Dec 11. J Am Med Inform Assoc. 2009. PMID: 19074302 Free PMC article.
Document classification for mining host pathogen protein-protein interactions.
Yin L, Xu G, Torii M, Niu Z, Maisog JM, Wu C, Hu Z, Liu H. Yin L, et al. Artif Intell Med. 2010 Jul;49(3):155-60. doi: 10.1016/j.artmed.2010.04.003. Epub 2010 May 15. Artif Intell Med. 2010. PMID: 20472411 Free PMC article.
An exploratory study of a text classification framework for Internet-based surveillance of emerging epidemics.
Torii M, Yin L, Nguyen T, Mazumdar CT, Liu H, Hartley DM, Nelson NP. Torii M, et al. Int J Med Inform. 2011 Jan;80(1):56-66. doi: 10.1016/j.ijmedinf.2010.10.015. Epub 2010 Dec 4. Int J Med Inform. 2011. PMID: 21134784 Free PMC article.
RLIMS-P: an online text-mining tool for literature-based extraction of protein phosphorylation information.
Torii M, Li G, Li Z, Oughtred R, Diella F, Celen I, Arighi CN, Huang H, Vijay-Shanker K, Wu CH. Torii M, et al. Database (Oxford). 2014 Aug 13;2014:bau081. doi: 10.1093/database/bau081. Print 2014. Database (Oxford). 2014. PMID: 25122463 Free PMC article.
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