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SortMeRNA: fast and accurate filtering of ribosomal RNAs in metatranscriptomic data.
Kopylova E, Noé L, Touzet H. Kopylova E, et al. Among authors: touzet h. Bioinformatics. 2012 Dec 15;28(24):3211-7. doi: 10.1093/bioinformatics/bts611. Epub 2012 Oct 15. Bioinformatics. 2012. PMID: 23071270
Finding the common structure shared by two homologous RNAs.
Perriquet O, Touzet H, Dauchet M. Perriquet O, et al. Among authors: touzet h. Bioinformatics. 2003 Jan;19(1):108-16. doi: 10.1093/bioinformatics/19.1.108. Bioinformatics. 2003. PMID: 12499300
CARNAC: folding families of related RNAs.
Touzet H, Perriquet O. Touzet H, et al. Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W142-5. doi: 10.1093/nar/gkh415. Nucleic Acids Res. 2004. PMID: 15215367 Free PMC article.
Predicting transcription factor binding sites using local over-representation and comparative genomics.
Defrance M, Touzet H. Defrance M, et al. Among authors: touzet h. BMC Bioinformatics. 2006 Aug 31;7:396. doi: 10.1186/1471-2105-7-396. BMC Bioinformatics. 2006. PMID: 16945132 Free PMC article.
Comparative analysis of RNA genes: the caRNAc software.
Touzet H. Touzet H. Methods Mol Biol. 2007;395:465-74. doi: 10.1007/978-1-59745-514-5_29. Methods Mol Biol. 2007. PMID: 17993692
Efficient and accurate P-value computation for Position Weight Matrices.
Touzet H, Varré JS. Touzet H, et al. Algorithms Mol Biol. 2007 Dec 11;2:15. doi: 10.1186/1748-7188-2-15. Algorithms Mol Biol. 2007. PMID: 18072973 Free PMC article.
MAGNOLIA: multiple alignment of protein-coding and structural RNA sequences.
Fontaine A, de Monte A, Touzet H. Fontaine A, et al. Among authors: touzet h. Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W14-8. doi: 10.1093/nar/gkn321. Epub 2008 May 30. Nucleic Acids Res. 2008. PMID: 18515348 Free PMC article.
Computational identification of protein-coding sequences by comparative analysis.
Fontaine A, Touzet H. Fontaine A, et al. Among authors: touzet h. Int J Data Min Bioinform. 2009;3(2):160-76. doi: 10.1504/ijdmb.2009.024849. Int J Data Min Bioinform. 2009. PMID: 19517987
Alignments of RNA structures.
Blin G, Denise A, Dulucq S, Herrbach C, Touzet H. Blin G, et al. Among authors: touzet h. IEEE/ACM Trans Comput Biol Bioinform. 2010 Apr-Jun;7(2):309-22. doi: 10.1109/TCBB.2008.28. IEEE/ACM Trans Comput Biol Bioinform. 2010. PMID: 20431150
BRASERO: A Resource for Benchmarking RNA Secondary Structure Comparison Algorithms.
Allali J, Saule C, Chauve C, d'Aubenton-Carafa Y, Denise A, Drevet C, Ferraro P, Gautheret D, Herrbach C, Leclerc F, de Monte A, Ouangraoua A, Sagot MF, Termier M, Thermes C, Touzet H. Allali J, et al. Among authors: touzet h. Adv Bioinformatics. 2012;2012:893048. doi: 10.1155/2012/893048. Epub 2012 May 23. Adv Bioinformatics. 2012. PMID: 22675348 Free PMC article.
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