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Systematic reconstruction of cellular trajectories across mouse embryogenesis.
Qiu C, Cao J, Martin BK, Li T, Welsh IC, Srivatsan S, Huang X, Calderon D, Noble WS, Disteche CM, Murray SA, Spielmann M, Moens CB, Trapnell C, Shendure J. Qiu C, et al. Among authors: trapnell c. Nat Genet. 2022 Mar;54(3):328-341. doi: 10.1038/s41588-022-01018-x. Epub 2022 Mar 14. Nat Genet. 2022. PMID: 35288709 Free PMC article.
Dystrophin deficiency impairs cell junction formation during embryonic myogenesis.
Mozin E, Massouridès E, Mournetas V, Lièvre C, Bourdon A, Jackson DL, Packer JS, Trapnell C, Guiner CL, Adjali O, Pinset C, Mack DL, Dupont JB. Mozin E, et al. Among authors: trapnell c. bioRxiv [Preprint]. 2023 Dec 7:2023.12.05.569919. doi: 10.1101/2023.12.05.569919. bioRxiv. 2023. PMID: 38106055 Free PMC article. Preprint.
Comprehensive single-cell transcriptional profiling of a multicellular organism.
Cao J, Packer JS, Ramani V, Cusanovich DA, Huynh C, Daza R, Qiu X, Lee C, Furlan SN, Steemers FJ, Adey A, Waterston RH, Trapnell C, Shendure J. Cao J, et al. Among authors: trapnell c. Science. 2017 Aug 18;357(6352):661-667. doi: 10.1126/science.aam8940. Science. 2017. PMID: 28818938 Free PMC article.
Reversed graph embedding resolves complex single-cell trajectories.
Qiu X, Mao Q, Tang Y, Wang L, Chawla R, Pliner HA, Trapnell C. Qiu X, et al. Among authors: trapnell c. Nat Methods. 2017 Oct;14(10):979-982. doi: 10.1038/nmeth.4402. Epub 2017 Aug 21. Nat Methods. 2017. PMID: 28825705 Free PMC article.
On the design of CRISPR-based single-cell molecular screens.
Hill AJ, McFaline-Figueroa JL, Starita LM, Gasperini MJ, Matreyek KA, Packer J, Jackson D, Shendure J, Trapnell C. Hill AJ, et al. Among authors: trapnell c. Nat Methods. 2018 Apr;15(4):271-274. doi: 10.1038/nmeth.4604. Epub 2018 Feb 19. Nat Methods. 2018. PMID: 29457792 Free PMC article.
The cis-regulatory dynamics of embryonic development at single-cell resolution.
Cusanovich DA, Reddington JP, Garfield DA, Daza RM, Aghamirzaie D, Marco-Ferreres R, Pliner HA, Christiansen L, Qiu X, Steemers FJ, Trapnell C, Shendure J, Furlong EEM. Cusanovich DA, et al. Among authors: trapnell c. Nature. 2018 Mar 22;555(7697):538-542. doi: 10.1038/nature25981. Epub 2018 Mar 14. Nature. 2018. PMID: 29539636 Free PMC article.
Highly scalable generation of DNA methylation profiles in single cells.
Mulqueen RM, Pokholok D, Norberg SJ, Torkenczy KA, Fields AJ, Sun D, Sinnamon JR, Shendure J, Trapnell C, O'Roak BJ, Xia Z, Steemers FJ, Adey AC. Mulqueen RM, et al. Among authors: trapnell c. Nat Biotechnol. 2018 Jun;36(5):428-431. doi: 10.1038/nbt.4112. Epub 2018 Apr 9. Nat Biotechnol. 2018. PMID: 29644997 Free PMC article.
A Single-Cell Atlas of In Vivo Mammalian Chromatin Accessibility.
Cusanovich DA, Hill AJ, Aghamirzaie D, Daza RM, Pliner HA, Berletch JB, Filippova GN, Huang X, Christiansen L, DeWitt WS, Lee C, Regalado SG, Read DF, Steemers FJ, Disteche CM, Trapnell C, Shendure J. Cusanovich DA, et al. Among authors: trapnell c. Cell. 2018 Aug 23;174(5):1309-1324.e18. doi: 10.1016/j.cell.2018.06.052. Epub 2018 Aug 2. Cell. 2018. PMID: 30078704 Free PMC article.
Cicero Predicts cis-Regulatory DNA Interactions from Single-Cell Chromatin Accessibility Data.
Pliner HA, Packer JS, McFaline-Figueroa JL, Cusanovich DA, Daza RM, Aghamirzaie D, Srivatsan S, Qiu X, Jackson D, Minkina A, Adey AC, Steemers FJ, Shendure J, Trapnell C. Pliner HA, et al. Among authors: trapnell c. Mol Cell. 2018 Sep 6;71(5):858-871.e8. doi: 10.1016/j.molcel.2018.06.044. Epub 2018 Aug 2. Mol Cell. 2018. PMID: 30078726 Free PMC article.
134 results