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Accurate atom-mapping computation for biochemical reactions.
Latendresse M, Malerich JP, Travers M, Karp PD. Latendresse M, et al. Among authors: travers m. J Chem Inf Model. 2012 Nov 26;52(11):2970-82. doi: 10.1021/ci3002217. Epub 2012 Oct 15. J Chem Inf Model. 2012. PMID: 22963657
EcoCyc: fusing model organism databases with systems biology.
Keseler IM, Mackie A, Peralta-Gil M, Santos-Zavaleta A, Gama-Castro S, Bonavides-Martínez C, Fulcher C, Huerta AM, Kothari A, Krummenacker M, Latendresse M, Muñiz-Rascado L, Ong Q, Paley S, Schröder I, Shearer AG, Subhraveti P, Travers M, Weerasinghe D, Weiss V, Collado-Vides J, Gunsalus RP, Paulsen I, Karp PD. Keseler IM, et al. Among authors: travers m. Nucleic Acids Res. 2013 Jan;41(Database issue):D605-12. doi: 10.1093/nar/gks1027. Epub 2012 Nov 9. Nucleic Acids Res. 2013. PMID: 23143106 Free PMC article.
Groups: knowledge spreadsheets for symbolic biocomputing.
Travers M, Paley SM, Shrager J, Holland TA, Karp PD. Travers M, et al. Database (Oxford). 2013 Sep 14;2013:bat061. doi: 10.1093/database/bat061. Print 2013. Database (Oxford). 2013. PMID: 24037025 Free PMC article.
The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases.
Caspi R, Altman T, Dreher K, Fulcher CA, Subhraveti P, Keseler IM, Kothari A, Krummenacker M, Latendresse M, Mueller LA, Ong Q, Paley S, Pujar A, Shearer AG, Travers M, Weerasinghe D, Zhang P, Karp PD. Caspi R, et al. Among authors: travers m. Nucleic Acids Res. 2012 Jan;40(Database issue):D742-53. doi: 10.1093/nar/gkr1014. Epub 2011 Nov 18. Nucleic Acids Res. 2012. PMID: 22102576 Free PMC article.
BioBIKE: a Web-based, programmable, integrated biological knowledge base.
Elhai J, Taton A, Massar JP, Myers JK, Travers M, Casey J, Slupesky M, Shrager J. Elhai J, et al. Among authors: travers m. Nucleic Acids Res. 2009 Jul;37(Web Server issue):W28-32. doi: 10.1093/nar/gkp354. Epub 2009 May 11. Nucleic Acids Res. 2009. PMID: 19433511 Free PMC article.
BioLingua: a programmable knowledge environment for biologists.
Massar JP, Travers M, Elhai J, Shrager J. Massar JP, et al. Among authors: travers m. Bioinformatics. 2005 Jan 15;21(2):199-207. doi: 10.1093/bioinformatics/bth465. Epub 2004 Aug 12. Bioinformatics. 2005. PMID: 15308539
A melanoma molecular disease model.
Vidwans SJ, Flaherty KT, Fisher DE, Tenenbaum JM, Travers MD, Shrager J. Vidwans SJ, et al. Among authors: travers md. PLoS One. 2011 Mar 30;6(3):e18257. doi: 10.1371/journal.pone.0018257. PLoS One. 2011. PMID: 21479172 Free PMC article.
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